UFO07378.5prime Sequence
1032 bp (922 high quality bases) assembled on 2011-06-23
> UFO07378.5prime
CAGTCGACATGTCGAGCGATTCGAGTCGAAGGATCCAGGTGCCCGAGGAG
CTGAAGGAGGTGCTGCTGCAGTTCTCGATCTCCTTTCTGGTGGAACAACC
GCCGGATGTGATCGATTACGCTGTGGAGTACTTCACCAAACTGCAGTCGG
AACGCCCGAGCGTCTCTCACACGGATCAAAGCACCGATGACCAGCTGAGC
GTCAACTCACAGGATGCCGATGCGGAACCACCAGTGATGGCCAGCTCGCG
TCGCAAATCAGTTTTCGCCGAGGCCTACGATCCGGAGGCGGATGACGACG
ATGATGGCGCCACCGCCGTGTTCCCCAAGACAGATGAGCAGCGCGCCCGG
CTGGTCGAGTCGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAGAAGGA
GCAGATGAACCAAGTCCTGGATGCCATGTTCGAGCGAAAGGTTCAGCCGG
GTGACTTTATCATCCGCCAGGGTGACGACGGCGATAACTTTTATGTTATT
GAATCTGGCGTCTACAAAGTCTATATTAATGACAAGCACATTAACACCTA
CAATCACACTGGACTCTTCGGTGAATTAGCGCTGCTCTACAATATGCCCA
GAGCGGCCACCGTGCAGGCGGAAACGAGTGGTCTACTTTGGGCCATGGAT
CGCCAGACCTTCCGCCGCATCCTCTTGAAGTCGGCCTTCAGGAAGCGGAA
AATGTACGAGGAGCTGTTGAACAGCGTGCCCATGCTGAAGGCCTTGCAGA
ACTACGAACGCATGAATCTGGCGGATGCCTTGGTTTCGAAGAGCTACGAC
AATGGCGAACGCATCATGAAACAGGGTGACGCCGCCGACGGCATGTACTT
CATTGAGGAGGGAACGGTGTCCGTGCGCATGACAGCGCGCGAGTGAACTC
CAGTGGCAGGAATCTCGGAGTGGCGGATACGACTACGGCAATCACATATG
CAGCATAAGACATTATGGTGATTCATGTCACGTAGTATCTTCACTGTGTT
TTGTGACTCGACGATCAGAGTTCAAGTTAAAG
UFO07378.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:42:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pka-R2-RE | 2102 | CG15862-RE | 510..1382 | 9..881 | 4350 | 99.9 | Plus |
| Pka-R2-RD | 1614 | CG15862-RD | 353..1225 | 9..881 | 4350 | 99.9 | Plus |
| Pka-R2-RB | 4108 | CG15862-RB | 374..1246 | 9..881 | 4350 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:42:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10005157..10005370 | 222..9 | 1070 | 100 | Minus |
| 2R | 25286936 | 2R | 9999734..9999916 | 404..222 | 915 | 100 | Minus |
| 2R | 25286936 | 2R | 9998415..9998564 | 749..600 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 9999425..9999529 | 505..401 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 9998707..9998802 | 601..506 | 480 | 100 | Minus |
| 2R | 25286936 | 2R | 9998269..9998349 | 827..747 | 390 | 98.8 | Minus |
| 2R | 25286936 | 2R | 9997834..9997890 | 881..825 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:42:29 has no hits.
UFO07378.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:38 Download gff for
UFO07378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R2-RC | 292..1164 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:13 Download gff for
UFO07378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R2-RB | 374..1246 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:52 Download gff for
UFO07378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pka-R2-RB | 374..1246 | 9..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:52 Download gff for
UFO07378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9998415..9998562 | 602..749 | 100 | <- | Minus |
| 2R | 9998707..9998802 | 506..601 | 100 | <- | Minus |
| 2R | 9999425..9999525 | 405..505 | 100 | <- | Minus |
| 2R | 9999734..9999915 | 223..404 | 100 | <- | Minus |
| 2R | 10005157..10005370 | 9..222 | 100 | | Minus |
| 2R | 9997822..9997889 | 826..890 | 92 | <- | Minus |
| 2R | 9998271..9998346 | 750..825 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:13 Download gff for
UFO07378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5885327..5885394 | 826..890 | 92 | <- | Minus |
| arm_2R | 5885776..5885851 | 750..825 | 98 | <- | Minus |
| arm_2R | 5885920..5886067 | 602..749 | 100 | <- | Minus |
| arm_2R | 5886212..5886307 | 506..601 | 100 | <- | Minus |
| arm_2R | 5886930..5887030 | 405..505 | 100 | <- | Minus |
| arm_2R | 5887239..5887420 | 223..404 | 100 | <- | Minus |
| arm_2R | 5892662..5892875 | 9..222 | 100 | | Minus |
