UFO07381.5prime Sequence
1046 bp (975 high quality bases) assembled on 2011-06-23
> UFO07381.5prime
CAGTCGACATGTCGGAGGCTGCCACGCCCCCAGGATCAGTGCCAGGAACA
GTATTCCCACCTGGCTTCGATCCCACTGCCGAATCGGTGGAGAAGACTCT
CTGCTTCCGGGGTTTCTGGGCCTGGGCCGTGCTGATATTCCTGATTGTTC
TGGGCATATTGCTCTTCATGTGGCTGCTGCGCAAGTGCATCCAAGGACCG
GCCTACCGGAAGGCCAATCGCATCGATGGCAAGGTGGTCATCGTCACCGG
CTGCAACACGGGCATTGGCAAGGAGACGGTCCTCGAGTTGGCCAAGCGGG
GTGCCCGCGTCTACATGGCCTGTCGGGATCCCGGTCGGTGTGAGGCCGCA
CGACTGGATATCATGGATCGCAGTCGCAACCAGCAGCTCTTCAATCGCAC
CCTGGATCTGGGCTCCCTGCAGTCGGTGAGAAATTTCGTGGAGCGCTTCA
AGGCGGAGGAATCCCGGCTGGATATACTGATCAATAATGCCGGCGTTATG
GCCTGTCCCAGGACCCTCACAGCCGATGGCTTTGAGCAGCAGTTCGGTGT
CAATCATCTGGGACACTTTTTGCTCACGAATCTGCTGCTGGATCGACTGA
AGCACAGCTCGCCCAGTCGCATTGTGGTGGTCAGTTCGGCGGCACATCTC
TTTGGGCGAATCAACCGCGAGGATCTGATGAGCGAGAAGAACTACAGCAA
GTTCTTTGGGGCGTACAGTCAGTCCAAGCTGGCCAACATCCTGTTTACCC
TCAAGCTGAGCACCATCCTTAAAGGACACAGGCGTAACGGTGAACTGTTG
TCATCCGGGTGTGGTCCGCACCGAGATCAACCGCCACTTTTCCGGTCCGG
CTGGATGAAGACCGCCCTGCAAAGGCTCGCTGTACTTCTTTAAGACACCA
AGGCTGGCGCCCAGACCCAGCTGAAATGGCGCTGGATCCGCAGTTGGAGG
CTCCTTGGTTGGTTATTTATTCTGATCGGTGTGGCCTTGGCATTTGTGTT
TCTTGGGTTCTGGAAATAGTGAACCTTCTATATGTGTTTTTTGTGA
UFO07381.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:42:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3842-RD | 2655 | CG3842-RD | 1062..2007 | 9..950 | 4555 | 99.2 | Plus |
| CG3842-RC | 2049 | CG3842-RC | 456..1401 | 9..950 | 4555 | 99.2 | Plus |
| CG3842-RB | 1875 | CG3842-RB | 282..1227 | 9..950 | 4555 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:42:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6342138..6343083 | 9..950 | 4425 | 99 | Plus |
| 2R | 25286936 | 2R | 7664079..7664180 | 228..329 | 255 | 83.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:42:34 has no hits.
UFO07381.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:38 Download gff for
UFO07381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3842-RB | 326..1294 | 1..967 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:15 Download gff for
UFO07381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3842-RB | 277..1245 | 1..967 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:54 Download gff for
UFO07381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3842-RB | 277..1245 | 1..967 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:54 Download gff for
UFO07381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6342133..6343083 | 1..950 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:15 Download gff for
UFO07381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6236166..6237116 | 1..950 | 98 | == | Plus |
