UFO07385.5prime Sequence
1074 bp (964 high quality bases) assembled on 2011-06-23
> UFO07385.5prime
CAGTCGACATGGGCGACTTCGATCTGAATGTGGACAGCTTGATACAGCGG
CTGCTGGAGAACTTTAAAAAACAAAAAGAGGCCGAAGAGCACGCCCAGAA
GCTGCTAATCGCTCAACAATTGGCCGCCGCCGGCGGAGCATCCGGCGCAT
CTGCCACATCGCCCACATCCAGCAGCAATTACTCGTCGATGGCGGCGGTG
GCCTCCTTTGGATCCGGATACGGATCGGGATCTGGTGCTGGTGCTCCTGG
TGCCGGCGCTGGCCCAGGATCCAGCCATGATCCGCTCGACGATCTCACCG
AACAGCAGCGCCGTCTGCTCCAGCAATACTCGATATCGCCGCCCAGCGAG
ACGATGATATCGGCCGATGGCGACCAGATCACCGTCCATCATCCGCGCGA
GGAGCCCAAGAAATCCAGATTGAAACTGCGCGATTTTTTCGTCGCCGAGT
TTGTGCGCAGCTGCCGAACGGGCAAACAGGTCCAGATGACGGAGGCGGAG
GTGCGTGGCCTCTGTCTCAAGTCGCGCGAGATCTTCTTGCAACAGCCCAT
CCTGCTGGAACTGGAGGCACCGCTGATCATCTGCGGCGACATCCACGGCC
AGTACACAGACCTGTTGCGCCTGTTCGAGTACGGCGGATTCCCTCCGGCT
GCCAACTACTTGTTCCTCGGCGACTACGTCGATCGGGGCAAGCAGTCCCT
GGAGACCATCTGTCTGCTGCTGGCCTACAAGATCAAATATCCGGAGAACT
TCTTCTTGTTGCGCGGCAACCACGAGTGCGCCAGTATTAATAGGATTTAC
GGCTTCTACGATGAGTGCAAGCGCCGATACAATGTCAAACTGTGGAAGAC
TTTCACAGATTGCTTCAACTGTCTGCCGGTAGCCGCCATTATTGACGAAA
AGATCTTCTTGCTGCCACCGCGGCCTCAGTCCCGGATCTTCATGCATGGA
GCAAATCCGTCGCCTAATGCGATAGCAAGATGTTGCCCGGATACCGGGTT
ACTGGTGCCGATCTCGGTGGGAGTGATCCCGAACAAACGGAAGTTCCAGG
TTGGGGGCGAGAAATGAATCCCGG
UFO07385.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:42:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flw-RA | 2524 | CG2096-RA | 553..1598 | 9..1063 | 4790 | 97.7 | Plus |
| flw-RC | 3883 | CG2096-RC | 605..1205 | 454..1063 | 2565 | 96.1 | Plus |
| flw-RB | 2131 | CG2096-RB | 605..1205 | 454..1063 | 2565 | 96.1 | Plus |
| flw-RC | 3883 | CG2096-RC | 553..604 | 9..60 | 260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:42:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10388443..10388835 | 61..453 | 1965 | 100 | Plus |
| X | 23542271 | X | 10406352..10406701 | 453..802 | 1750 | 100 | Plus |
| 3R | 32079331 | 3R | 12425123..12425574 | 971..519 | 1075 | 83 | Minus |
| X | 23542271 | X | 15359811..15360262 | 932..480 | 970 | 81.5 | Minus |
| 3R | 32079331 | 3R | 24518898..24519192 | 508..802 | 755 | 83.7 | Plus |
| X | 23542271 | X | 10406761..10406961 | 801..1004 | 675 | 93.2 | Plus |
| 2R | 25286936 | 2R | 17956013..17956347 | 886..552 | 385 | 74.3 | Minus |
| X | 23542271 | X | 10386512..10386563 | 9..60 | 260 | 100 | Plus |
| 3R | 32079331 | 3R | 24519597..24519724 | 804..932 | 235 | 80.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:42:48 has no hits.
UFO07385.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:40 Download gff for
UFO07385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flw-RA | 580..1612 | 9..1050 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:22 Download gff for
UFO07385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flw-RA | 553..1585 | 9..1050 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:00 Download gff for
UFO07385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flw-RA | 553..1585 | 9..1050 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:00 Download gff for
UFO07385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10388443..10388835 | 61..453 | 100 | -> | Plus |
| X | 10406762..10407001 | 802..1050 | 91 | | Plus |
| X | 10406353..10406700 | 454..801 | 100 | -> | Plus |
| X | 10386512..10386563 | 9..60 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:22 Download gff for
UFO07385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10280545..10280596 | 9..60 | 100 | -> | Plus |
| arm_X | 10282476..10282868 | 61..453 | 100 | -> | Plus |
| arm_X | 10300386..10300733 | 454..801 | 100 | -> | Plus |
| arm_X | 10300795..10301034 | 802..1050 | 91 | | Plus |
