UFO07387.5prime Sequence
1066 bp (896 high quality bases) assembled on 2011-06-23
> UFO07387.5prime
CAGTCGACATGGCAGACGACGATTTGAGGGCACTGGTCGATAGCCTGGAT
GACGCCTCGCAGGAGGACCTGGCCAAGGTCATCGCCAACTTCTCCGTGGA
CATGCTGCAGCGGGCCAGCGCCCTAATTGGCGCCCAGCAGGGCAGCAGTG
GGGGGCAGCTCCAGAACCGCACGCTACAGTGTCAACAGCAGCAGCAGCGG
GAGGAGGAGCAGGCATCCCTGGAGGCCCTAGCATCTGGTGGCAAGCGGAT
TTTACAATGTCCCAGCTCGTTCGATTCGGTCCTGTGCTGGCCACGCACAA
ACGCCGGCAGTCTGGCTGTACTACCCTGTTTCGAGGAATTCAAGGGCGTG
CACTACGACACCACAGACAATGCCACCCGCTTTTGCTTTCCAAACGGAAC
GTGGGATCACTATTCGGACTATGACCGCTGTCACCAGAACTCGGGCTCCA
TACCGGTGGTGCCCGACTTCTCACCCAACGTCGAACTGCCGGCCATCATA
TATGCCGGCGGTTATTTCCTGAGCTTCGCCACCTTGGTGGTGGCTCTCAT
CATATTCCTCAGCTTTAAAGATCTTCGTTGCCTGCGAAACACCATTCATG
CCAATTTGTTCCTCACCTACATCACATCCGCACTCCTCTGGATACTCACA
CTGTTCCTGCAAGTGATAACCACAGAGTCTAGTCAGGCTGGGCTGTGTAA
CGTTGGTAATCATGTTTCAGTACTTTTTACCTAACCAACTTTTTCTGGAT
GTTTGTGGAGGGCCTCTTATCTGTAACACGTGTGGTGGTGCAAACATTCT
CCAGTGATAACATTAGCTTTATTATCTACGCCCTCATCGGCTGGGGCTGT
CCAGCCGTTTGCATTTTGGTGTGGTCCATTGCCAAGGCATTTGCTCCGCA
TCTGAAGACCGACCACCTTCAATGGGCTTGGAAATTGGTTTGGTGCTGGA
ATGCGTTGAATCCTCACATTGAACGATAATTCCAAGAAACTGTGTCCACG
GCCTTAGGGGTAAACCAAAAATCCCCCTGAGCCACACAGTGGGTTACCTG
CACTAAAATATACGTT
UFO07387.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:42:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dh44-R2-RB | 3069 | CG12370-RB | 556..1510 | 7..972 | 4385 | 97.7 | Plus |
| Dh44-R2-RA | 2100 | CG12370-RA | 556..1510 | 7..972 | 4385 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:42:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12480932..12481173 | 7..248 | 1210 | 100 | Plus |
| 2R | 25286936 | 2R | 12484706..12484910 | 364..568 | 1025 | 100 | Plus |
| 2R | 25286936 | 2R | 12484538..12484656 | 248..366 | 595 | 100 | Plus |
| 2R | 25286936 | 2R | 12485287..12485420 | 783..916 | 595 | 96.3 | Plus |
| 2R | 25286936 | 2R | 12484966..12485066 | 569..669 | 490 | 99 | Plus |
| 2R | 25286936 | 2R | 12485116..12485211 | 665..762 | 360 | 95.9 | Plus |
Blast to na_te.dros performed 2014-11-26 23:42:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2376 | 155..217 | 121 | 73.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1084..1141 | 155..212 | 119 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6802 | 134..212 | 114 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6823 | 156..212 | 114 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6781 | 155..212 | 110 | 65.5 | Plus |
UFO07387.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:41 Download gff for
UFO07387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12370-RB | 532..1471 | 1..950 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:24 Download gff for
UFO07387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dh44-R2-RA | 552..1491 | 1..950 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:01 Download gff for
UFO07387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dh44-R2-RA | 552..1491 | 1..950 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:01 Download gff for
UFO07387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12485269..12485407 | 762..903 | 96 | == | Plus |
| 2R | 12485117..12485210 | 666..761 | 95 | -> | Plus |
| 2R | 12480928..12481173 | 1..248 | 98 | -> | Plus |
| 2R | 12484539..12484656 | 249..366 | 100 | -> | Plus |
| 2R | 12484709..12484910 | 367..568 | 100 | -> | Plus |
| 2R | 12484966..12485062 | 569..665 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:24 Download gff for
UFO07387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8368433..8368678 | 1..248 | 98 | -> | Plus |
| arm_2R | 8372044..8372161 | 249..366 | 100 | -> | Plus |
| arm_2R | 8372214..8372415 | 367..568 | 100 | -> | Plus |
| arm_2R | 8372471..8372567 | 569..665 | 100 | -> | Plus |
| arm_2R | 8372622..8372715 | 666..761 | 95 | -> | Plus |
| arm_2R | 8372774..8372912 | 762..903 | 96 | == | Plus |
