UFO07390.5prime Sequence
1071 bp (930 high quality bases) assembled on 2011-06-23
> UFO07390.5prime
CAGTCGACATGGTGGGCACAACACTGAAAATGCGTGGCGATGAGAACGCT
TCGGAGAACTTCAAGCAAGTGCAATTGAAGAAATTGACGGTTCCTTCCAT
GGAGGCAACAACAAAACGCGCGGCCTTGGGCGATTTGCAGAATCGCGGCA
TAAGTCGTCCCATCGCAGCGAAGGATGCGGCACAGAAAGACTCCAAGGAT
CTCAAGCTCACAGACGCCCTGCGCAATGCCAAAGCTCGGGTGGACAGCCA
CTGGAAGAAACAGCCACTGGGCAGCACCAATGGCAATGGCAATGGCGCCG
TTCCGCCCAAGGTCAACGAGGGGGGCGTGTCGGCGTTTTTGCGTTCGAAT
TCGGTGCGCAATCGCGTTCCGACCAAGACCACTGTAGAACCCACTAAAGT
TACAGTCAAGTCCAGTTCTTCCGAGAACGTGAACGAGCCCACCTTAAAGC
GCGAGGACAGCAATCTGTCGAAGAAGTCGCTGACCAAACTGCGTGCCGCT
TTGGCCAAACCCGTGATGGGAGTTTCAGGAATTCGACGGGAACCAGTAGC
TGTTTCCCGCAAAGAGGCAGAGACCAAGAAGGAACTGCCAGAAACCAAGA
AGGACTCACTGGAAGTGAAAAAGGATGCGACCAGGATGCCCCTTATTAGG
GGCAACAGTGCAGTCACTACGACCACATCTACGATGCCCACCACCATGTC
CCTTTCCAGCAAGCGCTTGGCTGGAATCGAGGACATTGATGCCAATGACA
AGGAGAACCTGGTACTGGTCTCCGAATATGTAAACCGACATCTACGACTA
CTTGTATCAGTGGAGCTGGAGCAGCCCATTCACAAAGATCACCTGGCCCG
GACAGAAGGAGTGTCCCACAGGATGCGAGCCGTGCTGATCGATTGGATCA
ACGAAGGTCCACCTGCAGTTCCATCTGGCTGCAGAGACTTCCAGCTGGCG
GTGCTATCATTGATCGCTACCTGCAGGCTGGTCAAGGACCCAACGTCGTA
CTTGCAATTGGGTGGGAGTGACAGCCACTCCTACAGCACAAGTACGAGGG
GTCGTTCCCGCGGCAATCGGG
UFO07390.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:42:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycB-RA | 2633 | CG3510-RA | 268..1334 | 9..1070 | 4820 | 97.7 | Plus |
| CycB-RE | 2627 | CG3510-RE | 268..1328 | 9..1070 | 4720 | 97.1 | Plus |
| CycB-RC | 2548 | CG3510-RC | 217..1249 | 43..1070 | 4650 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:42:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22804975..22805568 | 989..396 | 2560 | 98.3 | Minus |
| 2R | 25286936 | 2R | 22805667..22805875 | 399..191 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 22805940..22806087 | 190..43 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:42:58 has no hits.
UFO07390.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:42 Download gff for
UFO07390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RA | 297..1337 | 1..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:27 Download gff for
UFO07390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RA | 260..1300 | 1..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:02 Download gff for
UFO07390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB-RA | 260..1300 | 1..1040 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:02 Download gff for
UFO07390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22805667..22805875 | 191..399 | 100 | <- | Minus |
| 2R | 22805940..22806085 | 45..190 | 100 | <- | Minus |
| 2R | 22806646..22806689 | 1..44 | 93 | | Minus |
| 2R | 22804923..22805564 | 400..1040 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:27 Download gff for
UFO07390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18692428..18693069 | 400..1040 | 96 | <- | Minus |
| arm_2R | 18693172..18693380 | 191..399 | 100 | <- | Minus |
| arm_2R | 18693445..18693590 | 45..190 | 100 | <- | Minus |
| arm_2R | 18694151..18694194 | 1..44 | 93 | | Minus |
