UFO07391.5prime Sequence
901 bp (639 high quality bases) assembled on 2011-06-23
> UFO07391.5prime
CAGTCGACATGTCGGAGATTGTCGACACCGAGCTGCTGGTCAACTGCACC
ATCCTCGCCGTCCGTCGATTCGAGCTGAATAGCATTGTGAACACCACGCT
CCTGGGCAGTCTCAACAGAACCGAGGTGGTCAGCCTCTTGTCGAGCATTA
TCGACAATCGGGATAATCTCGAGAGCATCAATGAGGCCAAAGACTTTCTG
ACCGAGTGCCTGTTTCCATCGCCGACAAGACCGTACGAGTTGCCATGGGA
GCAGAAAACGATTTGGGCTATAATTTTCGGTCTGATGATGTTTGTGGCCA
TTGCTGGCAATGGTATTGTTCTCTGGATCGTTACAGGACATCGCAGCATG
AGGACGGTCACAAATTACTTCCTGCTGAACTTGAGCATCGCCGACCTGCT
GATGTCGTCGCTGAACTGCGTCTTCAACTTTATATTCATGCTGAACTCAG
ATTGGCCATTCGGTTCGATTTATTGCACAATCAACAATTTCGTGGCCAAC
GTCACGGTCTCTACGTCGGTCTTCACGCTCGTGGCCATAAGTTTCGATAG
ATACATCGCCATTGTGCATCCGCTGAAACGCCGCACGTCGCGTCGGAAGG
GCGCATCATCCTGCTCCTGATCTGGGGACTCAGCTGTGTGCTGACGGCCC
CTTGTCTGCTCTACTCCGCATCATGACCAATGACTATTACATGGGAAATC
GAGGACGGTCTTGCTTCATGATGTGGCCAGATGGACGATTATCCCCCTTT
CTTTGTCGGGATTATGCATACTGCCCTGCGCTATCCTGGTACTGACCTAC
GGCATTTCCCATGATTGTTGATGCCTCATATGCTACTCCCCAAGGGTCGG
GCCCAGGGGGGGCTGTAAATCATTCGGCAAGAACCCGGATCCCCCAAAGG
G
UFO07391.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:43:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TkR86C-RB | 3223 | CG6515-RB | 950..1826 | 9..891 | 3680 | 95.4 | Plus |
| TkR86C-RA | 2659 | CG6515-RA | 539..1415 | 9..891 | 3680 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:43:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10741416..10741632 | 550..334 | 1085 | 100 | Minus |
| 3R | 32079331 | 3R | 10750098..10750279 | 190..9 | 910 | 100 | Minus |
| 3R | 32079331 | 3R | 10741830..10741976 | 337..191 | 735 | 100 | Minus |
| 3R | 32079331 | 3R | 10741192..10741326 | 680..548 | 500 | 94.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:43:02 has no hits.
UFO07391.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:42 Download gff for
UFO07391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Takr86C-RB | 943..1790 | 1..854 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:30 Download gff for
UFO07391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Takr86C-RA | 532..1379 | 1..854 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:03 Download gff for
UFO07391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TkR86C-RA | 532..1379 | 1..854 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:03 Download gff for
UFO07391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10739453..10739508 | 684..739 | 92 | <- | Minus |
| 3R | 10741189..10741323 | 551..683 | 93 | <- | Minus |
| 3R | 10741416..10741629 | 337..550 | 100 | <- | Minus |
| 3R | 10741831..10741976 | 191..336 | 100 | <- | Minus |
| 3R | 10750098..10750286 | 1..190 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:30 Download gff for
UFO07391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6565175..6565230 | 684..739 | 92 | <- | Minus |
| arm_3R | 6566911..6567045 | 551..683 | 93 | <- | Minus |
| arm_3R | 6567138..6567351 | 337..550 | 100 | <- | Minus |
| arm_3R | 6567553..6567698 | 191..336 | 100 | <- | Minus |
| arm_3R | 6575820..6576008 | 1..190 | 97 | | Minus |
