UFO07392.5prime Sequence
1095 bp (904 high quality bases) assembled on 2011-06-23
> UFO07392.5prime
CAGTCGACATGGACGATTTGGATGCTCTATTAGCCGACCTGCAAAACAGT
GTGCCAGGCCAGCCGCAGCAACCTCAGCCGCAATATGGAACTGTCCAGCC
CAAACATCAAGCTCTGCAGCAACAGCAGTTTGTGGACAACACTCCAGGTT
ATGGAAGTCTCAGGGGCAAAGCCCAGCCCCAGGTGTATCAAGAGCACTAC
AGCGTAGAGACACGCTCCCCAACGGCTGGACATGATTTTAATGGCTCCTC
CACGACTCCGGGATACGCTAACCAGGGATCGTTGCCACGTCAGGCGGCGG
GTGCAAGCACAGGACTCTCAGAACTGGACTCCTTGCTGCAGGATCTGCAG
AAAATCGATGTACCGGTCAACTACAGTACTCCAGTCTCGAAATACAATAC
GATGAATAGTTATGCCACCGTGGAGGAGCGTCCTTCAGTGGACAGCCTGC
TGAAAGAACTGGACAATGCTCACATCTATGCTGTTCCTAACGGATCTGCG
CATAAATCTCCGACGCCGGGACGACATGTCACCATCACCGTTCGGGAAAC
GAAGACGGAGAAGTTGACGGGTCCGGATGGACCAGTTGGCACTGTCGAGG
AGCAAATTGTGCAGCAGAAGGATTCTTATACGCCCAATCATGCTGTTCCG
GGACAACAGGTGCATCAGGCCTATACGTCGCAGGCCACCAAGGAACTGTA
TGATCTGATGGCTTCACTTTCCGACTTTCAAGGTTAGCAACGGAACAAAC
GGGCATCGGAAACGGCAAGTCATCCGCAACAGCAATTCGTCGACAGTGCA
GCACCCAGACGGGTAACCGACTACCCCAGACCAACAAGGGGTAGCCAGCA
AGCACATCTCACCCAGACGATCGAGGAGACGACCATCGTCGAAGAACAGT
CGCGAGAGATCAGGTGGAATTCCTATGCTAGGCATCCTACAGGCCAATAT
GAAGTCCGCCCAAGGAGCTCAATACCGTGGCAGGAGGGCTGCTTGCAATT
GCTTGCAATGAGCCCATTGGGGGAGTGGGTGGAATCCACAGCCCCTGGAT
GCCCTGGGATCTCCGGAAAACAAGTCACGGTGCAACCACACTGGC
UFO07392.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:43:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pax-RC | 2377 | CG31794-RC | 374..1376 | 4..1023 | 4390 | 96.6 | Plus |
Pax-RK | 2255 | CG31794-RK | 239..1226 | 19..1023 | 4330 | 96.6 | Plus |
Pax-RJ | 2253 | CG31794-RJ | 265..1252 | 19..1023 | 4330 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:43:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19410480..19410648 | 185..17 | 830 | 99.4 | Minus |
2L | 23513712 | 2L | 19410248..19410414 | 351..185 | 820 | 99.4 | Minus |
2L | 23513712 | 2L | 19409408..19409552 | 727..583 | 710 | 99.3 | Minus |
2L | 23513712 | 2L | 19409769..19409910 | 493..352 | 710 | 100 | Minus |
2L | 23513712 | 2L | 19404472..19404688 | 952..727 | 535 | 90.7 | Minus |
2L | 23513712 | 2L | 19409612..19409704 | 585..493 | 465 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 23:43:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6814 | 14..128 | 124 | 62.2 | Plus |
UFO07392.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:43 Download gff for
UFO07392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pax-RC | 200..1191 | 1..1011 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:31 Download gff for
UFO07392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pax-RC | 372..1363 | 1..1011 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:05 Download gff for
UFO07392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pax-RC | 372..1363 | 1..1011 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:05 Download gff for
UFO07392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19409404..19409549 | 586..732 | 98 | <- | Minus |
2L | 19409612..19409703 | 494..585 | 100 | <- | Minus |
2L | 19409769..19409910 | 352..493 | 100 | <- | Minus |
2L | 19410248..19410413 | 186..351 | 99 | <- | Minus |
2L | 19410480..19410650 | 15..185 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:31 Download gff for
UFO07392.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19409404..19409549 | 586..732 | 98 | <- | Minus |
arm_2L | 19409612..19409703 | 494..585 | 100 | <- | Minus |
arm_2L | 19409769..19409910 | 352..493 | 100 | <- | Minus |
arm_2L | 19410248..19410413 | 186..351 | 99 | <- | Minus |
arm_2L | 19410480..19410650 | 15..185 | 98 | -> | Minus |