Clone UFO07392 Report

Search the DGRC for UFO07392

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:73
Well:92
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptPax-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO07392.5prime Sequence

1095 bp (904 high quality bases) assembled on 2011-06-23

> UFO07392.5prime
CAGTCGACATGGACGATTTGGATGCTCTATTAGCCGACCTGCAAAACAGT
GTGCCAGGCCAGCCGCAGCAACCTCAGCCGCAATATGGAACTGTCCAGCC
CAAACATCAAGCTCTGCAGCAACAGCAGTTTGTGGACAACACTCCAGGTT
ATGGAAGTCTCAGGGGCAAAGCCCAGCCCCAGGTGTATCAAGAGCACTAC
AGCGTAGAGACACGCTCCCCAACGGCTGGACATGATTTTAATGGCTCCTC
CACGACTCCGGGATACGCTAACCAGGGATCGTTGCCACGTCAGGCGGCGG
GTGCAAGCACAGGACTCTCAGAACTGGACTCCTTGCTGCAGGATCTGCAG
AAAATCGATGTACCGGTCAACTACAGTACTCCAGTCTCGAAATACAATAC
GATGAATAGTTATGCCACCGTGGAGGAGCGTCCTTCAGTGGACAGCCTGC
TGAAAGAACTGGACAATGCTCACATCTATGCTGTTCCTAACGGATCTGCG
CATAAATCTCCGACGCCGGGACGACATGTCACCATCACCGTTCGGGAAAC
GAAGACGGAGAAGTTGACGGGTCCGGATGGACCAGTTGGCACTGTCGAGG
AGCAAATTGTGCAGCAGAAGGATTCTTATACGCCCAATCATGCTGTTCCG
GGACAACAGGTGCATCAGGCCTATACGTCGCAGGCCACCAAGGAACTGTA
TGATCTGATGGCTTCACTTTCCGACTTTCAAGGTTAGCAACGGAACAAAC
GGGCATCGGAAACGGCAAGTCATCCGCAACAGCAATTCGTCGACAGTGCA
GCACCCAGACGGGTAACCGACTACCCCAGACCAACAAGGGGTAGCCAGCA
AGCACATCTCACCCAGACGATCGAGGAGACGACCATCGTCGAAGAACAGT
CGCGAGAGATCAGGTGGAATTCCTATGCTAGGCATCCTACAGGCCAATAT
GAAGTCCGCCCAAGGAGCTCAATACCGTGGCAGGAGGGCTGCTTGCAATT
GCTTGCAATGAGCCCATTGGGGGAGTGGGTGGAATCCACAGCCCCTGGAT
GCCCTGGGATCTCCGGAAAACAAGTCACGGTGCAACCACACTGGC

UFO07392.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
Pax-RC 2377 CG31794-RC 374..1376 4..1023 4390 96.6 Plus
Pax-RK 2255 CG31794-RK 239..1226 19..1023 4330 96.6 Plus
Pax-RJ 2253 CG31794-RJ 265..1252 19..1023 4330 96.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19410480..19410648 185..17 830 99.4 Minus
2L 23513712 2L 19410248..19410414 351..185 820 99.4 Minus
2L 23513712 2L 19409408..19409552 727..583 710 99.3 Minus
2L 23513712 2L 19409769..19409910 493..352 710 100 Minus
2L 23513712 2L 19404472..19404688 952..727 535 90.7 Minus
2L 23513712 2L 19409612..19409704 585..493 465 100 Minus
Blast to na_te.dros performed 2014-11-26 23:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6700..6814 14..128 124 62.2 Plus

UFO07392.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 13:42:43 Download gff for UFO07392.5prime
Subject Subject Range Query Range Percent Splice Strand
Pax-RC 200..1191 1..1011 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:00:31 Download gff for UFO07392.5prime
Subject Subject Range Query Range Percent Splice Strand
Pax-RC 372..1363 1..1011 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:50:05 Download gff for UFO07392.5prime
Subject Subject Range Query Range Percent Splice Strand
Pax-RC 372..1363 1..1011 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:50:05 Download gff for UFO07392.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19409404..19409549 586..732 98 <- Minus
2L 19409612..19409703 494..585 100 <- Minus
2L 19409769..19409910 352..493 100 <- Minus
2L 19410248..19410413 186..351 99 <- Minus
2L 19410480..19410650 15..185 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:00:31 Download gff for UFO07392.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19409404..19409549 586..732 98 <- Minus
arm_2L 19409612..19409703 494..585 100 <- Minus
arm_2L 19409769..19409910 352..493 100 <- Minus
arm_2L 19410248..19410413 186..351 99 <- Minus
arm_2L 19410480..19410650 15..185 98 -> Minus