UFO07402.5prime Sequence
1117 bp (992 high quality bases) assembled on 2011-07-01
> UFO07402.5prime
CAGTCGACATGGCAACGGATGTGCAATCTTTTTACAAAGACAAAACTGTC
TTCCTAACAGGCGGCAGTGGATTCCTTGGAAAAGTGACCATTGCGAAGCT
GCTCTGCACCACCGAGGTGAAGCGCATCTATGTGCTGCTCCGTGCCAAAC
GCGGCCAGGAAATGCGGGAGCGATGCGCCGCATGGGATAAGGATCCGGTA
TTCGGTAATCTAATGAAAACAAATCCCGAGGCTCTGAAGCGCGTGGTACC
TTGTGGTGGCGATTGCCAGGAGCCGGATCTTGGCCTGAGCAACAGCGATC
GTCAGGTTTTGATAGATGAGGTGCAGATTGTTATCCACACGGCGGCCACT
GTGCGTTTTGTGGAGCCGCTGCACATCGCCCTGGCTGTTAACACCCGAGC
CACCCGACTCATGATTCAACTGGCCAAGGAGATGTCCCACTTGGAGTCCT
TTGTCCATGTGTCCACCGCGTACTCAAACTGCGTGGTGGAGCACGTAAGT
GAACGCTTCTATCCGGAGCACTTGACCTGCCCTGCCGAAAAGATCCTAGA
GCTGCTGGAAAGCATAAGTCCTGAGCTATTGGATAAAATGGCACCGGCGC
TGATGGGCAAGTATCCCAATACGTATACGTATACCAAGGCTCTGACGGAG
CAGGTGATCCAGAAGGAGGCGAAAGATTTGCCGCTTAGCATTTTTCGTCC
GGGTGTCATAATTGCCAGCTATAAGGAGCCCATGCCCGGCTGGATCGACA
ACCTGTACGGACCCATTGCAGTTCTCTACGGAGCAGCCTTCGGAATACTG
CATATCACACTGCTTAATCTTAAGGCCAGGCTGGAATTGTACCCGTGGAT
TACTGCGTCAATATGGTGCTGACCTGCGCTTGGAACACGGCCCGGGATAC
AAGTATCAAGCTATGCCGGAGCAACTATCTACAATTTTACGCCAAATAAT
GATAACCTGATAACCTGGGGGGGATTTCGGGACAAGGCGGCGAAGCTGCG
GTACCCGTATTCCACTGACCAGAATGAAGTGGTGCGTTCTGCATTGACCA
CCATTCCTCGGCTATTCCGGTTCACGGGCATCTTTTATCCCCTGCTTCCC
GCTATGCAATTGAATCT
UFO07402.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:59:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10096-RD | 2358 | CG10096-RD | 110..1221 | 9..1113 | 5145 | 98 | Plus |
| CG10096-RB | 1841 | CG10096-RB | 110..1221 | 9..1113 | 5145 | 98 | Plus |
| CG10097-RC | 4716 | CG10097-RC | 3059..4096 | 83..1113 | 4775 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:59:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12391848..12392359 | 708..197 | 2560 | 100 | Minus |
| 3R | 32079331 | 3R | 12391394..12391792 | 1101..709 | 1445 | 94.2 | Minus |
| 3R | 32079331 | 3R | 12392456..12392573 | 200..83 | 590 | 100 | Minus |
| 3R | 32079331 | 3R | 12392827..12392902 | 84..9 | 380 | 100 | Minus |
| 3R | 32079331 | 3R | 16618397..16618628 | 318..549 | 305 | 75.4 | Plus |
| 3R | 32079331 | 3R | 16615774..16615940 | 318..484 | 250 | 76.6 | Plus |
| 2L | 23513712 | 2L | 8520272..8520553 | 388..669 | 240 | 72.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 23:59:27 has no hits.
UFO07402.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:09 Download gff for
UFO07402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 102..1224 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:38 Download gff for
UFO07402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 102..1224 | 1..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:03 Download gff for
UFO07402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 102..1224 | 1..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:03 Download gff for
UFO07402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12391378..12391792 | 709..1117 | 94 | <- | Minus |
| 3R | 12391848..12392358 | 198..708 | 100 | <- | Minus |
| 3R | 12392459..12392571 | 85..197 | 100 | <- | Minus |
| 3R | 12392827..12392910 | 1..84 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:38 Download gff for
UFO07402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8218181..8218293 | 85..197 | 100 | <- | Minus |
| arm_3R | 8218549..8218632 | 1..84 | 96 | | Minus |
| arm_3R | 8217100..8217514 | 709..1117 | 94 | <- | Minus |
| arm_3R | 8217570..8218080 | 198..708 | 100 | <- | Minus |
