UFO07405.5prime Sequence
1114 bp (1012 high quality bases) assembled on 2011-07-01
> UFO07405.5prime
CAGTCGACATGCAAACTACGAGGAGCACCCGGCTGCTGTCCTTGGCCAGG
AGATTCGTCCACACCCGAACGGCATCTCAATCGGCCCAGAACTCCAAAGG
AATGGCAAGTGGCGCGGAATCCATCTCCGGAAAGGAGAAAACCACACATT
TCGGCTTCCAAACAGTTCGGGAAAGTGAAAAGGAACAAAAGGTTCACGAG
GTCTTCGAACAGGTGGCCAACTCCTATGACGTGATGAACGATGCCATGTC
CCTGGGCATCCATCGCGTGTGGAAGGATGTGTTCGTCGAACGACTGGGTC
CCACGCACGGTATGCGCTTGCTGGACATGGCTGGCGGCACCGGGGACATC
ACCTTCCGCTACCTGCGTTATCTGAACAACCAGCCGAATCCCCAACAGCG
TCCCAGCCACGTCACTGTGTCGGACATCAACCAGCACATGCTAAACGTGG
GCGAGGAGCGGGCCAAGAGGCTGGGACTTACCACCGACCAGCTGTCCAAC
TGCACCGTCGCATGGCAGTGCGCCGATGCCGAGAAGTTGCCCTTCCCGGA
CGCTAGCTTTACGGCCTACACTATTGCCTTTGGCATCAGGAACTGCACAC
ATGTGGATAAGGTTCTTTCTGAAGCGTATCGAGTGCTGCAGCCGGGCGGA
CGATTCATGTGCCTGGAGTTCAGTCATCTGACGAACGAAACGATGCAATG
GCTATATGACCAGTACTCCTTCCAGGTGATTCCGCCGATGGGCCAATTGC
TGGCTGGTCAGTGGCAGGCGTACCAGTATCTCGTTGAGAGCATCCGACGG
TTTCCCAAGCAGAGCAATTCAAGCAAATGATCGAGCAGGCCGGATTCGAT
CAGTGTCCTACGAGAACCTAACCTTCGGCGTGGTCAGCATTCACTCCGGC
TTCAAACTGGCAAGCTTTCTAGACCATTCGTTTGGCGCGGGGGCCCAGGT
AAGTGGTCATAATCATAATCATATCATATCATATCACAACTAGGCTAGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAACGCCGGCGGC
ACGAACGTCTGAACAATTCGAATGGGAGTTCTGAGGTCATAACTGGATCA
TCAAGGATCAGCCG
UFO07405.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:59:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2453-RC | 1347 | CG2453-RC | 204..1106 | 9..909 | 4450 | 99.7 | Plus |
| CG2453-RB | 1231 | CG2453-RB | 88..990 | 9..909 | 4450 | 99.7 | Plus |
| CG2453-RA | 1188 | CG2453-RA | 45..947 | 9..909 | 4450 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13193686..13194107 | 613..192 | 2110 | 100 | Minus |
| X | 23542271 | X | 13193335..13193638 | 909..608 | 1405 | 99 | Minus |
| X | 23542271 | X | 13194165..13194348 | 192..9 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 23:59:40 has no hits.
UFO07405.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:11 Download gff for
UFO07405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2453-RA | 19..935 | 1..915 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:43 Download gff for
UFO07405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2453-RA | 19..935 | 1..915 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:09 Download gff for
UFO07405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2453-RA | 38..954 | 1..915 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:09 Download gff for
UFO07405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13193328..13193634 | 612..915 | 98 | <- | Minus |
| X | 13193688..13194106 | 193..611 | 100 | <- | Minus |
| X | 13194165..13194355 | 1..192 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:43 Download gff for
UFO07405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13087361..13087667 | 612..915 | 98 | <- | Minus |
| arm_X | 13087721..13088139 | 193..611 | 100 | <- | Minus |
| arm_X | 13088198..13088388 | 1..192 | 97 | | Minus |
