UFO07408.5prime Sequence
1154 bp (1048 high quality bases) assembled on 2011-07-01
> UFO07408.5prime
CAGTCGACATGTCGGACTATAGATCGCAATCGCGCAGTGGCGGGGGGCGT
GGCGGTCAGGAGTACTCGAACGACGACGATCCGCCGATGTCGCGTCTCTT
CATCATTTGCAACAAGGCGCACACCGAGGAGGATTTCCGTGAAGCCTTCT
CGCCATACGGCGAAATCGAGGATATCTGGGTGGTGAAGGACAAGCACACC
CAGGAGAACAAGGGAATCGCGTACGTCAAGTTCTCCAAGACATCCGATGC
TGCCAAGGCACAGGAGGAGATGAACGGCAAGACCATTGGCAAGATGGATC
GCACCCTTAAAGTCCTGGTGGCAGCCAATCGCAATCAGGGCTCAAATAAG
TCTGAGAACGAGCAGGAGAAGTACGTGAGACTCTTCATAGTGATCCCCAA
AACAGCCACCGAGGAGGATATTCGCGAGGAATTCTCGCAGTGGGGCGATG
TGGAATCTGTCACAATTGTCAAGGAGAAGAACAATGGCAATCCCAAGGGC
TTCGGATATGTCCGCTTTACCAAGTTTTACTATGCAGCTGTGGCTTTCGA
AAACTGCTCCGCCAAGTATAAAGCTGTCTTTGCCGAGCCAAAGGGTTCTA
CACGCACACAGCGTGACCAGTACGGCCGTCCCTCCGAGGACAATCCCTTG
TATAGCAGCTCGGGACGTGGCAATTCCAATTTCAATGGAGGCGGTAGCAG
CAGCGGTGGCGGCGGCAGCAACAGCTACAACAACGACTGGAATGTATCGC
AGACAACGACATGGCGGCCTTCCTGCGCATGCAGAATGTGCCAGTGGCCC
AGCCATCCTGTCTGGAGGTTAACGTGAGCAACTGCGTCAACCAGGATCAG
CTCTGGCGTCTCTTCGACATAATTCCCGGCTTGATTACTGCCAAATCATG
CGCGAACATGGACCGCGCACCATGAGCCTTAGTGTGTACGACACCCAGAG
CCGCCATTTATGCAAGACAACTCATGCCTGAGTACCAATGGGCGACGCAT
CATGTCAAGTCATGATGACTCAGCTCGCATGACCATCTCATAACAGCGAC
AAAGAGCATCTGCATGTTCCTGCCCATCAGCCATGCTCGCCGAAAACAGT
GGTAAAGACTGTCATGTTCACGACTGCCAATCGATTGAAACTTCTTCGGT
CGGA
UFO07408.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:59:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1316-RA | 2222 | CG1316-RA | 113..1157 | 8..1031 | 4695 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 23:59:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4284605..4284990 | 524..907 | 1830 | 99.5 | Plus |
| 3L | 28110227 | 3L | 4283963..4284283 | 8..328 | 1590 | 99.7 | Plus |
| 3L | 28110227 | 3L | 4284343..4284543 | 325..525 | 990 | 99.5 | Plus |
Blast to na_te.dros performed 2014-11-26 23:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6696..6780 | 659..741 | 132 | 63.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1116..1157 | 696..737 | 120 | 76.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1105..1151 | 691..737 | 118 | 72.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6766 | 695..742 | 114 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2346 | 683..734 | 113 | 71.2 | Plus |
UFO07408.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:13 Download gff for
UFO07408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1316-RA | 103..1172 | 1..1045 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:48 Download gff for
UFO07408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1316-RA | 107..1176 | 1..1045 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:15 Download gff for
UFO07408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1316-RA | 107..1176 | 1..1045 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:15 Download gff for
UFO07408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4283957..4284283 | 1..328 | 98 | -> | Plus |
| 3L | 4284347..4284541 | 329..523 | 100 | -> | Plus |
| 3L | 4284605..4284990 | 524..907 | 99 | -> | Plus |
| 3L | 4285053..4285113 | 908..963 | 91 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:48 Download gff for
UFO07408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4283957..4284283 | 1..328 | 98 | -> | Plus |
| arm_3L | 4284347..4284541 | 329..523 | 100 | -> | Plus |
| arm_3L | 4284605..4284990 | 524..907 | 99 | -> | Plus |
| arm_3L | 4285053..4285113 | 908..963 | 91 | == | Plus |
