UFO07415.5prime Sequence
1125 bp (1025 high quality bases) assembled on 2011-07-01
> UFO07415.5prime
CAGTCGACATGGCGGCAATTACTAGCAATGTGTCGCGATTGGAGCCAATG
CGCGGTATTTCCATAATCATTGAATCGCCAGAAGTGGCAACGGCAACACC
ACCACCAGCAACAACAACCGCAACTGCCGAAGCAGAAGCCGCAACAAAAC
AAGTAGCACCAACTGCCAAGAGCAACAGCAACACTGAAATGTCGCTCAAG
TCACAGGCTGCTGGCATGTTGCTGGCATTTGGCGACACAGCAGCAACAGC
CAAAGATAATTTGGAAACTAGTTACGACACTGCAGCAAAGTCGACAGCAG
CACCAGAGACCAACAAAATCTATCCGCAGTTACTGTTGCGCATTGGCGGA
GAAATTGCCGGTGCAACAGCATCAGCAGAAGCAGCAGCATCAGCAGCAAC
AGCAGCAGCAGCAACAGCAACATCACCGACCATAATCAGCTGCAATGGTG
AAATTGCCGCCAGTCAAGCAGCAGCAACAGCAGCGGACACAGCGGCAACA
TTGCAACACAACAATACGGTGAAGATTCAAATCGAAAGCCAGGGTCAGCA
GCGAACACTGGGCAAGCAGATAAGTGTGGTGAAGCTGAACGAGGGCGTGG
AGGAGATGCAGCAGCACATGTGCTATTTGGTGGACACCAGTGGCCAGTAC
TCGCCCTGCGAGACCTTGGACAGTGGCACGGGCAGCGATCTGGAGAATCA
TCCGCAGCAGCAGCAGCAGCCGCAACAGGTGAGATCACCGCAACTGGAGC
TTCATCTGCAGACCACGCGGCTGATGGTCAACGAGGAGGCGGACCATAAG
CACAGCCCGCTGGAGACGCCGAGTCCCGTTCCGAAGCGAGCATATAGCCT
CACCGATGACAGCGAGGAATGCGATGAGAGCAGCAACTCATCGCTAAGCT
GCGATTCCCTGCACTCTGGTGGCCTGCTGCCCACTACCCTGCTGCGGGAT
ATTCGATTCAGGGAACGAGCGTCCGGTCCTCCTGGTCACCAAATCAATGG
CAGACCATTGCATTCGAAACGGATGGCCTATACCATCCATGTGCCGCGAC
ACGAGGATTTCCCGAGTTGTCATCTCGACGAATACCAACCCACACTAACG
ATGACGACGGATAGATTGTGCTTCG
UFO07415.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12206-RC | 2348 | CG12206-RC | 302..1365 | 8..1068 | 5080 | 99 | Plus |
CG12206-RB | 2653 | CG12206-RB | 607..1670 | 8..1068 | 5080 | 99 | Plus |
CG12206-RA | 2416 | CG12206-RA | 370..1433 | 8..1068 | 5080 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:00:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3472129..3473149 | 1027..8 | 4960 | 99.7 | Minus |
Blast to na_te.dros performed 2014-11-27 00:00:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2982 | 86..744 | 421 | 56.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6921 | 363..557 | 323 | 66.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6923 | 280..484 | 307 | 65.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2445..2869 | 88..513 | 305 | 56.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2627 | 363..640 | 304 | 60.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6661..6921 | 243..516 | 302 | 62.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6942 | 389..616 | 288 | 62.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2886 | 238..756 | 285 | 55.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6864 | 366..511 | 281 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2517 | 363..558 | 276 | 63.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2527 | 287..513 | 266 | 62.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2482 | 387..564 | 255 | 65.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2430..2951 | 79..565 | 251 | 56.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..7221 | 79..537 | 250 | 55.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..7007 | 87..304 | 248 | 61.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..7032 | 238..513 | 242 | 59.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6828 | 78..183 | 237 | 72.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6643..7180 | 15..569 | 215 | 54.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1159 | 398..501 | 196 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2809 | 88..513 | 188 | 54.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1061..1149 | 94..183 | 187 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2622..3031 | 88..479 | 185 | 55.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2785..2889 | 80..182 | 178 | 66 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6827..6996 | 79..248 | 174 | 60.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1091..1158 | 79..146 | 169 | 72.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1486..1596 | 79..189 | 168 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6822 | 399..513 | 164 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2401 | 417..513 | 157 | 67.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1104..1173 | 467..537 | 136 | 69.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1025..1146 | 377..500 | 134 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6860..6947 | 79..169 | 133 | 62.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1115..1173 | 79..137 | 133 | 69.5 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 510..568 | 88..146 | 133 | 69.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1521..1587 | 61..133 | 126 | 68.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6856 | 467..569 | 123 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1613 | 88..171 | 119 | 65.6 | Plus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 499..561 | 65..127 | 117 | 65.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6774 | 456..508 | 116 | 71.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1092..1125 | 467..500 | 116 | 82.4 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7943..8026 | 91..174 | 114 | 59.5 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9387..9470 | 91..174 | 114 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1608 | 465..517 | 112 | 67.9 | Plus |
UFO07415.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:15 Download gff for
UFO07415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12206-RC | 296..1345 | 1..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:54 Download gff for
UFO07415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12206-RA | 364..1413 | 1..1049 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:20 Download gff for
UFO07415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12206-RA | 364..1413 | 1..1049 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:20 Download gff for
UFO07415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3472129..3473155 | 1..1027 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:54 Download gff for
UFO07415.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3366162..3367188 | 1..1027 | 99 | | Minus |