UFO07417.5prime Sequence
1105 bp (1005 high quality bases) assembled on 2011-07-01
> UFO07417.5prime
CAGTCGACATGGGCTGTGCACCGGGCGGACCTTGCTGCGGACCCTGTGGA
CCGTGTTGCGGACCCTGTTGTGGACCCTGTTGTGGACCCTGTTGTGGACC
CTGTTGTGGACCTTGCGGGCCCTGCTGTGGCCCCTGTGGACCTCGTTGTG
GCCCTTGCGGACCCTGTGGACCGTGCTGTGGCACTATGGAAAAACGAAAT
GGCCTTCAGCGGTGCTGTCCTTTTGCAAGCTTTCTAGACCATTCGTTTGG
CGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATA
ATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCA
CCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATG
GAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCG
ATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTC
ATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCT
GAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCC
ATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATC
AAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCT
CAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACA
TCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACT
CCAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAG
GGTGAACACTATCCCATATCACCAGCTCACCGTCTTTCATTGCCATACGA
AATTCCGGATGAGCATTCATCAGCGGGCAAGAATGTGAATAAAGGCCGGA
TAAACTTGTGCTTATTTTTCTTTACGTCTTTAAAAAAGCCGTAATATCCA
GCTGACGTCTGGTTATAGGTACAATGAGGCCACCTGACTGAATGCCTCAA
ATTTCTTACGATGCCAATGGAATATTCCACCGGTGTAATTCATGAATTTT
TTCCA
UFO07417.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:00:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst84Dd-RA | 415 | CG17935-RA | 104..321 | 7..224 | 1090 | 100 | Plus |
| Mst84Dc-RB | 359 | CG17945-RB | 87..196 | 33..142 | 215 | 80.5 | Plus |
| Mst84Dc-RA | 363 | CG17945-RA | 91..200 | 33..142 | 215 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:00:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7363401..7363618 | 224..7 | 1090 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:00:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..299 | 793..860 | 123 | 68.1 | Plus |
UFO07417.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:15 Download gff for
UFO07417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst84Dd-RA | 104..326 | 7..231 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:56 Download gff for
UFO07417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst84Dd-RA | 104..326 | 7..231 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:22 Download gff for
UFO07417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst84Dd-RA | 104..326 | 7..231 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-27 00:53:22 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 16:04:56 has no hits.
