UFO07418.5prime Sequence
1137 bp (996 high quality bases) assembled on 2011-07-01
> UFO07418.5prime
CAGTCGACATGACAAGAGGAGCGTTAAAAGTGACCATTTTACTGGTCGGA
TTGGGCCTGGTTTTGGCCGGATCTCGGCCTATTTCTGATTGCGGTGAGCG
CATTGAAGACGATGGCTACCCGATGGAGCGCCACGAGGTGGTCACCAGTG
ACAACTACATCCTGACTATGCACCGCATCCCGTATTCCCCCAAAACGGGT
GAATCTTCCAACCGACCGGTGGCCTTCCTCATGCACGGCATGCTGAGTTC
TTCCTCCGATTGGGTGCTCATGGGTCCAGAGCGATCCCTGGCCTATATGC
TGGCCGATGCCGGCTACGATGTGTGGATGGGCAATGCCCGAGGCAACACC
TACTCCAAGGCGCACAAGTACTGGCCCACTTACTGGCAGATCTTCTGGAA
CTTCAGCTGGAACGAGATCGGCATGTACGACGTTCCGGCGATGATTGATT
ATGTCTTGGCAAAGACTGGACAGCAGCAGGTGCAATATGTGGGCCACTCC
CAGGGTACCACTGTCTATCTGGTGATGGTGTCGGAGAGACCCGAGTACAA
TGACAAGATCAAGTCCGCCCATCTTCTGGGACCAGCCGCCTATATGGGCA
ACATGAAGAGCCCCTTGACCCGCGCCTTTGCACCCATTTTGGGCCAGCCC
AATGCCATCGTGGAGGTCTGCGGATCCATGGAGTTCATGCCCAGCAATAA
GTTCAAGCAGGATTTGGGCATAGAGATGTGCCAGGCCACTTCTCCTTATG
CCGACATGTGCGCCAACGAGATCTTCCTGATTGGAGGCTATGATACCGAA
CAGCTGGACTACGACTCCTTGAGCACATCAAGGCACGTCTCCGCTGGCGC
ATCGGTGACCAGACTTGCACTTTGTCAGATATACTCTGGAAAGTCCGTAA
TTCGACTACACCGCTCTCGTATCCCTATGAGTACGGCAGCTACTTCCTCG
GATACAGCTAAGATGCCAGCTCGTCTATGACTACGACATGACTGATGGCG
ATGGAGCGTGCCGCAGTAAACGACTGCCACTGGCTGACTACTGTGCGTCG
AATGGCCATTGATCATGGATGAGCGAACGTCACGAAGCTGACAGATCTAA
ACACTCGACTCTGCGCGATGCTACTATCATTACATAC
UFO07418.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:00:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lip3-RA | 1434 | CG8823-RA | 159..1110 | 9..947 | 4445 | 98.6 | Plus |
| CG8093-RB | 1555 | CG8093-RB | 311..445 | 224..358 | 240 | 78.5 | Plus |
| CG8093-RA | 1334 | CG8093-RA | 311..445 | 224..358 | 240 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:00:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13370788..13371508 | 813..93 | 3605 | 100 | Minus |
| 3R | 32079331 | 3R | 13371662..13371746 | 93..9 | 425 | 100 | Minus |
| 2R | 25286936 | 2R | 15215170..15215304 | 358..224 | 240 | 78.5 | Minus |
| 3L | 28110227 | 3L | 20460995..20461065 | 285..355 | 220 | 87.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:00:24 has no hits.
UFO07418.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:16 Download gff for
UFO07418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lip3-RA | 154..1128 | 1..961 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:04:59 Download gff for
UFO07418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lip3-RA | 154..1128 | 1..961 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:24 Download gff for
UFO07418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lip3-RA | 154..1128 | 1..961 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:24 Download gff for
UFO07418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13370789..13371508 | 93..812 | 100 | <- | Minus |
| 3R | 13371663..13371751 | 1..92 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:04:59 Download gff for
UFO07418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9196511..9197230 | 93..812 | 100 | <- | Minus |
| arm_3R | 9197385..9197473 | 1..92 | 95 | | Minus |
