UFO07419.5prime Sequence
1122 bp (1013 high quality bases) assembled on 2011-07-01
> UFO07419.5prime
CAGTCGACATGCCCATCATTCGGCTGGAGTCTGCGGACAAGGAGATCTTT
GACACGGATCAGGAGATCGCCAAGTGCTCGGAAACGATTCGCATTGCAAT
AGAGGATTTGGGCGATGAGAGCGACAACAGTGTGCTGCCGTTGCCGAATG
TCAACTCGCTGATCCTGAAGAAAGTGCTCCACTGGGCCACCTATCACAAG
GACGATCCTGTGGTTACCGAAGAGGTTGAGAACAAGGAGAAGCGCACTGA
TGACATCTCATCCTGGGACGCTGACTTTCTCAAAGTCGACCAGGGCACGC
TGTTCGAACTGATCCTCGCGGCAAACTACCTGAATATCCAGGGTCTGCTC
GACGTCACCTGCAAGACGGTGGCCAATATGATCAAGGGCAAGTCGCCGCA
GGCTATTCGCGACACCTTCGCCATCCAGAATGACTTTCTGCCACAGGAGG
AGGAACAGGTGCGCAAGGAGAACGAGTGGTGTGAGGATAAAGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTT
GCGTATAATATTTGCCCATGGTGAAACGGGGGCGAAGAAGTTGTCCATAT
TGGCCACGTTTAAATCAAAACTGGTGAACTCACCCAGGGATTGGCTGAGA
CGAAAAACATATCTCATAAACCCTTTAGGGAAATAGCCAGTTTTCACCGT
ACACGCCACATCTTGCGAATATATGGTGTAGAACTGCGAAATCGTCTGGT
TATTCCCTCCGAGCGATGAACGTTTCAGTTGCTCATGAACGGGTTACAGG
TGAACTATCCCATTTCCAGTCC
UFO07419.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:00:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpB-RA | 877 | CG8881-RA | 248..730 | 9..491 | 2415 | 100 | Plus |
| SkpA-RI | 826 | CG16983-RI | 167..518 | 136..487 | 440 | 75.7 | Plus |
| SkpA-RH | 1544 | CG16983-RH | 885..1236 | 136..487 | 440 | 75.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:00:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12139442..12139924 | 491..9 | 2415 | 100 | Minus |
| X | 23542271 | X | 657240..657591 | 136..487 | 440 | 75 | Plus |
| X | 23542271 | X | 19816391..19816567 | 250..426 | 210 | 74.6 | Plus |
| 2R | 25286936 | 2R | 23458303..23458401 | 389..291 | 195 | 79.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:00:28 has no hits.
UFO07419.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:17 Download gff for
UFO07419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpB-RA | 73..567 | 1..495 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:01 Download gff for
UFO07419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpB-RA | 240..734 | 1..495 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:27 Download gff for
UFO07419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SkpB-RA | 240..734 | 1..495 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:27 Download gff for
UFO07419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12139442..12139929 | 1..491 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:01 Download gff for
UFO07419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8026947..8027434 | 1..491 | 99 | | Minus |
