UFO07433.5prime Sequence
1124 bp (987 high quality bases) assembled on 2011-07-01
> UFO07433.5prime
CAGTCGACATGGCCATCATAACGAGTGCCTTCTTCTCGTCGATGAGCTTC
GCCGGCCTGTTCTCCGGCTCCCTGTTCCAGCGCTTTGGAATGCGGCAGGT
GGGCGTCACTGGCGGCATCTTGTACTTCCTGGGCACTGGAATGCAGTTGT
TCGCCACCTCCACGCTACACCTGATCATGGCCTTTAGCGTCGTTCAGGGA
TTCGCCTTCGGGCTGATGGTGCCCACCTGCTATACGACATTCAACCATTA
TTTTGTCAAGAACCGCGTGATGTGGATGAGCTTTGCCCAGACACTGATTG
GCTTGGGCTCCATGCTATATCCGATTGTCATGCAGAAGTTGATGTCATGG
TACGGCTTCCGCGGTTGCCTGCTCATCCTCACGGGACTGAATGCTCATGC
GGTGTTCGGGATGCTGGTCATGCACCCAGTGGAGTGGCACATGCGTCGCG
TGCCCATCCAGCCCGAGGAGCAGGAGGAACTCAAGGAGTTGAGCCCAACG
GTGGTGATTAGAGTGCAGCCGGAAACACCGCTTAAGGCTACCAGAGAGGA
GCCCAACTTTCATACCGCTGATCCAGGAGCGCGAAAGCTCTCCCACGCCG
AGGAGCAAATGCTGAAGGTTCTGTCCAGTCGGGCCTCGAGCATCACCAGC
CTGGGCAATTGGTCCGGACCCGTGGTGGTCAGTGACGCCTCGCCCCAGAT
GATGCACAGCCTGCAGACCTCACGGCGTCCGAGCACGATTGCCGGTGCAT
CATGTGCAGTAGCTCCAGCCCACGCTACCAAAAAGAGCTGGGTGCGCACC
ATCGTCGACTTCCTCGATCTCACGCTGCTGAAGAAGCCCATTTTCGTTAA
CATCGTGCTGGGCATCACCTTTGCCCTCTACTCCGACATCACCTTCTTCA
CCATGCAGCCAGTCTACCTATTTGAGCTGGGATACAGCAGCCCGACACGG
CCACCATTATCGCCATTGGAGCGGCCGCAGACTGGCATTCTCGAATTTTC
CTGGCATCACCGCCGTGTGCATCCAGGTTCTTCGAGATCCTTTATTGGCG
GGAACGTTTCATCGTCTTGGCAGAATCGTAGGCACCTCCTGGATTCCAAG
AAACTCCTCTCCCATATCCATCAT
UFO07433.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8028-RD | 1947 | CG8028-RD | 443..1510 | 8..1068 | 5030 | 98.6 | Plus |
| CG8028-RC | 1846 | CG8028-RC | 258..1325 | 8..1068 | 5030 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:01:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19278975..19279907 | 940..8 | 4650 | 99.9 | Minus |
| X | 23542271 | X | 19277887..19277980 | 1030..938 | 345 | 93.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:01:09 has no hits.
UFO07433.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:23 Download gff for
UFO07433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RB | 224..1281 | 1..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:22 Download gff for
UFO07433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RC | 251..1308 | 1..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:44 Download gff for
UFO07433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8028-RC | 251..1308 | 1..1053 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:44 Download gff for
UFO07433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19277887..19277977 | 941..1030 | 95 | <- | Minus |
| X | 19278974..19279912 | 1..940 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:22 Download gff for
UFO07433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19171920..19172010 | 941..1030 | 95 | <- | Minus |
| arm_X | 19173007..19173945 | 1..940 | 99 | | Minus |
