UFO07434.5prime Sequence
1105 bp (976 high quality bases) assembled on 2011-07-01
> UFO07434.5prime
CAGTCGACATGCAGGCCACCAAGATGCGTACGCCGTTTGCCATTCAGGAG
ATCCTGGGACTGGGCGCCTATCAGCAGCAGGCCACTGCCAGTGCCACGCC
CTCCGAGGCGCCACCCTCGCCGGCCGCCACGCCGCCGCCCACAGCGAATA
CGCCCGCTAATGGCTCGCTATCCGCCGTACAGCAGCAACAGCAGCAGCAA
CAGCAGCAGCAGCAACAACAGCAACAGCTGCAGCAGCAACAACAGCAGGC
GATTGATAGCCTCCGCGAATCCCGATCCATATCGCCGGATGTCTCCAGAC
TCTCGGCCGCTGCAGCGGCGGCGGCAGCGGCTGCCGCCCACTGCCAATTG
CCCGTCTTCAATCCGGCCAACTTCTATGCCGCCGCCGGCTATGCCGCTGC
AGCGGATCCGGGCAACGCGGCTGCAGCCCATCACCACCACATGACCACCT
TGGCGGCGGCCGCCTATCTTCGGGGATTCCTGCCGCCCGGATTCAGCACG
CCCCACGAGTTTCGGGGCCACTTCCAGCAGCACTTCGGCGCTCAGTTTGC
AGAACAAGCTGCCGCTCGTGGCCAGGAGTACGCCAGCAGTTTGGCCAATG
CCAGTGGAGATGAGCAGTCGCCCAGCAAGAATAGCAGTTCATCGGGCAAC
GGCGGATCCGGCGGATCGGGATCAGGATCTGGTGGCGGCAATCCGACCTC
GAATGGCCTCGGGCACCTGGGCTCGCCAACGGCCAGCAATGGTGGATCCG
GCGGTGGAGCCGGAGTGGGCGGATCGGGCGGTGGATCGGGCACGTCGGGC
AGCAACTCCTCGACATCCAGAAACGGCGGTAACCGCGGCAGCTCCGGCAG
TCGCTCCTCGCCCGCTGGTCCCATCACTCGGCCGCCTGGCTGCCCATCAC
ATGCAGCGGCTGCTGCGTCGCCGCTCATCATCATGCGCGCCGCTGCTGCG
GCCATCATGCTCACCACGCCACGCCAGGCGAAGCTCATGCCACGCGCATG
TCCACGCCCTGCCGCTCACGCCGCCCCATGCCGCCCAAGCCCATAGCCCA
TCTTGTCAGGGATATCTAGGAATCAGGCGGCGGAACCGAGAGAAATCCCA
AATAC
UFO07434.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:00:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vsx1-RB | 3633 | CG4136-RB | 293..1346 | 9..1052 | 4810 | 97.9 | Plus |
| Vsx1-RA | 2983 | CG4136-RA | 293..1346 | 9..1052 | 4810 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:00:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5594547..5595090 | 9..552 | 2705 | 99.8 | Plus |
| X | 23542271 | X | 5606082..5606587 | 550..1044 | 1785 | 95.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:00:41 has no hits.
UFO07434.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:19 Download gff for
UFO07434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vsx1-RA | 275..1344 | 9..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:08 Download gff for
UFO07434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vsx1-RA | 293..1362 | 9..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:32 Download gff for
UFO07434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vsx1-RA | 293..1362 | 9..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:32 Download gff for
UFO07434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5606085..5606570 | 553..1026 | 96 | == | Plus |
| X | 5594547..5595090 | 9..552 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:08 Download gff for
UFO07434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5488580..5489123 | 9..552 | 99 | -> | Plus |
| arm_X | 5500118..5500603 | 553..1026 | 96 | == | Plus |
