UFO07435.5prime Sequence
977 bp (864 high quality bases) assembled on 2011-07-01
> UFO07435.5prime
CAGTCGACATGCCATCGGCAGATCAGATCCTGTTTGTAAATGTCACCACA
ACGGTGGCGGCGGCGGCTCTAACCGCTGCGGCCGCCGTCAGCACCACAAA
GTCCGGAAGCGGCAACGCCGCACGGGGCTACACGGATTCGGATGACGATG
CGGGCATGGGAACGGAGGCGGTGGCTAACATATCCGGCTCGCTGGTGGAG
GGCCTGACCACCGTTACCGCGGCATTGAGTACGGCTCAGGCGGACAAGGA
CTCAGCGGGAGAATGCGAAGGAGCTGTGGAGGAGCTGCATGCCAGCATCC
TGGGCCTCCAGCTGGCTGTGCCGGAGTGGGAGGCCCTTCTCACCGCCCTG
GTTCTCTCGGTCATTATCGTGCTGACCATCATCGGGAACATCCTGGTGAT
TCTGAGTGTGTTCACCTACAAGTTGCTGCGCATCGTCCAGAACTTCTTCA
TAGTTTCGCTGGCGGTGGCCGATCTCACGGTGGCCCTTCTGGTGCTGCCC
TTCAACGTGGCTTACTCGATCCTGGGGGCGCTGGGAGTTCGGCATCCACC
TGTGCAAGCTGTGGCTCACCTGCGACGTGCTGTGCTGCACTAGCTCCATC
CTGAACCTGTGTGCCATAGCCCTCGACCGGTACTGGGCCATTACGGACCC
CATCAACTATGCCCAGAAGAGGACCGTTGGTCGCGTCCTGCTCCTCATCT
CCGGGTGTGGCTACTTTCGCTGCTGATAAGTAGTCCGCCGTTGATCGGCT
GGACGACTGGCCGGACGAGTTCACAGCGCCACGCCCTGCGAGCTGACCTC
GCAGCGAGGCTACGTGATCTACTCCTCGCTGGCTCTTCTTTATCCGCTGG
GCATCATGACGATCGTCTCATCAGATCTTCTGGCCACGCGCGCCGCCTTA
AGGAAGCGAGCCAGGGCCACAAGCTTTACCGATCGCTCCTGAAGTCCCTG
AGAGTCCGAGCCGATGTAGTCCTCTGC
UFO07435.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:00:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oct-TyrR-RB | 3675 | CG7485-RB | 665..1630 | 9..966 | 4315 | 97.5 | Plus |
| Oct-TyrR-RA | 3682 | CG7485-RA | 672..1637 | 9..966 | 4315 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22061962..22062558 | 331..919 | 2345 | 96.3 | Plus |
| 3L | 28110227 | 3L | 22061081..22061405 | 9..333 | 1625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:00:46 has no hits.
UFO07435.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:19 Download gff for
UFO07435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TyrR-RB | 665..1630 | 9..966 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:11 Download gff for
UFO07435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oct-TyrR-RA | 672..1637 | 9..966 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:34 Download gff for
UFO07435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oct-TyrR-RA | 672..1637 | 9..966 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:34 Download gff for
UFO07435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22061081..22061404 | 9..332 | 100 | -> | Plus |
| 3L | 22061964..22062605 | 333..966 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:11 Download gff for
UFO07435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22054181..22054504 | 9..332 | 100 | -> | Plus |
| arm_3L | 22055064..22055705 | 333..966 | 96 | | Plus |
