UFO07437.5prime Sequence
1147 bp (999 high quality bases) assembled on 2011-07-01
> UFO07437.5prime
CAGTCGACATGGATGTTGTTAAAGAAGTTCTGGCCAAACACCAAAAGGAA
TTGGACAAATACAAGCCGATCACAGTAGAAAAGCATTTGGAATGCCGACT
CGACGTTGGCAGCCTGCTGATCACAGATCCCAACGATTTCGATGACCGGG
AATTGAGGGACAACAAAGAGGAGTACCTGACCGCACTGACACGGGAGAAC
ACCCAACTTTTGGTCAATGCCATTTGGGAGTTGCCCACCGAACGGGTAGA
CGAGAGCATTGTGGCCAAGCTGCCGGAACCCACGACGGTACTGCCCCGCC
TCCGTAAGCCGCCAGGTCCACGTCCGCTCACCAAATGGGAGAAGTTCGCC
AAGGAGAAGGGTATCAGCAAGAAGAAGAAGGACAAGAAGACCTACGATGA
GACCATGGATAAATGGGTGCCTACATATGGTTTTAAGCGTGCCGAGGCCG
AGAAGGCCAAGGATTGGGTGCTGGAGGTGCCACAGAACGCCGATCCCAAT
ACGGACATGTTCCAGAAGAAGATCGACCTGCGCAACGAGAAGGTGGCCAA
GAATGAGATCCAGCGGATGAAGAACATTGTGCGCGCCAAGAAGATCGACA
TGCCACGCAGCGGTTACTTGGGACCCGAGGCTGCCTCATCCAGCCAGTTG
TTAACGGCCGTCACTGTGGCCAAATCCTCCACAGCCTCAGTCGGCAAATT
CCAAAACAAACTGCCCAAGGAGAAGGAGGCACGTGGTCTGGGCATTAAAG
AGCTGATTCTCGGCGGCAAACGCAAGCAGTCGCATATCACACAACGCCGG
AGAAGGAGCCAACCTGGATCTCATCAAGAGCGTGCTGACAGAGCCAAACT
GGACGTGAGCAAGCGGTATCGATGGAGAGCGCGACATCGCTTGCACGCGA
GCAGAGCTGAGATGACCAGCAGAGGCGGCAGAGCCAGGCAGGCAGTCGCA
GCGGTGGCAGAGTCAGGCATCGTGTCAAGGCTCCGGCAGAGCGCAGCGTC
GCAACGTCCCGCAGCTTCTAGACATCGTGGCGCCGGCCAGTATGGCTATC
TATCTATCTATCTATCCACTAGCTAGAATCTGCTGACAGCTGATCCACAT
AAAGCCGGGCACGAGTGACATCATGATCAGCTTCGGATTCCAGTCAG
UFO07437.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:01:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32409-RA | 1231 | CG32409-RA | 72..987 | 9..912 | 4265 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:01:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5900115..5900589 | 411..878 | 2070 | 97.7 | Plus |
| 3L | 28110227 | 3L | 5899803..5900057 | 156..410 | 1275 | 100 | Plus |
| 3L | 28110227 | 3L | 5899599..5899748 | 9..158 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:01:18 has no hits.
UFO07437.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:24 Download gff for
UFO07437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32409-RA | 58..987 | 9..924 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:25 Download gff for
UFO07437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32409-RA | 72..1001 | 9..924 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:48 Download gff for
UFO07437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32409-RA | 72..1001 | 9..924 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:48 Download gff for
UFO07437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5899599..5899747 | 9..157 | 100 | -> | Plus |
| 3L | 5899805..5900057 | 158..410 | 100 | -> | Plus |
| 3L | 5900115..5900609 | 411..897 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:25 Download gff for
UFO07437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5892905..5893157 | 158..410 | 100 | -> | Plus |
| arm_3L | 5892699..5892847 | 9..157 | 100 | -> | Plus |
| arm_3L | 5893215..5893709 | 411..897 | 97 | == | Plus |
