UFO07439.5prime Sequence
1139 bp (893 high quality bases) assembled on 2011-07-01
> UFO07439.5prime
CAGTCGACATGGCACAGAGCAAATTGAACGATCTTGCCGGCAAGCTGGGC
AAAGGTGGTCCGCCGGGATTGGGAATCGGACTGAAGGTCCTGGCCGCCGT
GGGAGCAGCCGCCTATGGAGTCAGTCAGTCCCTGTACACCGTTGAGGGTG
GTCACCGCGCCATCATCTTCAGCCGTCTGGGCGGCATCCAGAGCGACATT
TACTCCGAGGGACTGCACGTGCGCATCCCCTGGTTCCAGTATCCCATTAT
CTATGACATTCGCTCGCGTCCCCGCAAAATATCCTCGCCCACTGGCTCCA
AGGATCTGCAGATGATCAACATCTCGCTGCGTGTGCTGTCGCGCCCCGAT
TCCCTGAACCTGCCCTATCTGCACAAGCAGCTGGGCGTGGACTACGACGA
GAAGGTGCTGCCCTCCATTTGCAACGAGGTGCTGAAGAGCGTGATTGCCA
AGTTCAATGCCTCGCAGCTTATTACCCAGCGTCAGCAGGTATCCCTACTC
ATCCGCAAGGAGCTGGTCGAGCGCGCCCGCGACTTCAACATCATTCTGGA
CGATGTGTCCCTCACCGAGCTGAGCTTCGGCAAGGAATACACGGCGGCCA
TTGAGGCCAAACAAGTGGCTCAGCAGGAGGCACAGCGGGCTGTCTTCTTT
GTGGAGCGCGCCAAGCAGGAGAAGCAGCAGAAGATTGTTCAGGCTGAGGG
AGAAGCCGAGGCTGCTAAAATGTTAGGTCTGGCCGTGAAGCAGACCCAGC
CTACCTGAGCTGCGCAAGCTGCGTGCGCTCAAGCATTGCACGCACGATTG
CCAGCTCACAGACAAGTCTATTTGTCGGCGATAGCTTGATGCTTACATCA
GACTCTGGCTCGATGACTGACCGAAAGTTAAAAGAAAGCAGCTTTTAGAC
ATCGTTGGGCGCGGCCAGTAGTGTCTATCTATCTATCTATCTATCCACTA
GCTAGAATCTGTCTGATAGTGTTGATTCCCAAAAACCCGCGCACGCGTCT
ACATCAATGATTTAGCTTATGTCACAAGATCACACCATCATACCCCGCTG
CTTTCAGATTTATCTACTTTGCATGACTCCACGAAGACTGATCCACGACA
CTGCTGCTATTGCTGACGGCAATCATGGCTTACATGAAT
UFO07439.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:01:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phb2-RF | 1614 | CG15081-RF | 167..1044 | 9..874 | 4090 | 98.6 | Plus |
| Phb2-RE | 1237 | CG15081-RE | 71..948 | 9..874 | 4090 | 98.6 | Plus |
| Phb2-RD | 1312 | CG15081-RD | 71..948 | 9..874 | 4090 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:01:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18820195..18820545 | 141..491 | 1755 | 100 | Plus |
| 2R | 25286936 | 2R | 18820603..18820838 | 487..722 | 1180 | 100 | Plus |
| 2R | 25286936 | 2R | 18819633..18819765 | 9..141 | 665 | 100 | Plus |
| 2R | 25286936 | 2R | 18821041..18821118 | 723..796 | 190 | 94.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:01:23 has no hits.
UFO07439.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:25 Download gff for
UFO07439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)03709-RA | 130..1019 | 1..877 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:27 Download gff for
UFO07439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)03709-RD | 63..952 | 1..877 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:50 Download gff for
UFO07439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phb2-RD | 63..952 | 1..877 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:50 Download gff for
UFO07439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18820605..18820838 | 489..722 | 100 | <- | Plus |
| 2R | 18821041..18821118 | 723..796 | 94 | -> | Plus |
| 2R | 18819625..18819765 | 1..141 | 97 | -> | Plus |
| 2R | 18820196..18820542 | 142..488 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:27 Download gff for
UFO07439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14707130..14707270 | 1..141 | 97 | -> | Plus |
| arm_2R | 14707701..14708047 | 142..488 | 100 | -> | Plus |
| arm_2R | 14708110..14708343 | 489..722 | 100 | <- | Plus |
| arm_2R | 14708546..14708623 | 723..796 | 94 | -> | Plus |
