UFO07441.5prime Sequence
1127 bp (1005 high quality bases) assembled on 2011-07-01
> UFO07441.5prime
CAGTCGACATGTCTTCTTCCTCCACCTCCATGTCCAAGCAACCGGTGGAC
GAGATCTTGGTGGAACCACCGGCAGCCCAGCCTCCGCGTCCAGATGACAC
ACTTAGTGTACACTCGGACCACTCCTTGCATCCCGGATCCCTTGACGCCT
CGCATGCCAAGAACAGAAAGATCTACATTATGCGGCATGGCGAGCGAGTC
GACTTTACTTTTGGAACATGGATTCCATATTGCTTCGATGAGTTTGGAAA
TTACATGAGGAAGGATTTAAACATGCCGAAGACGCTGCCTCGTCGGAAGA
ACAGTCCGGAGGGCTGGCAGAATGATTCTCCGCTGACAAATGTGGGTGTC
TATCAGGCCAATCTTATTGGTCAAGCTTTGCTGGAGGCTCAAGTGCAGAT
CGACCATGTTTACTGTTCGCCCTCGTATCGCTGCATCCAGACTTGCACCA
GTGCGCTTGAGGGGCTGAAGCTTACGGGCAAGCAAAAAATCAAACTGGAG
CCGGGCCTGTTTGAGTGGATGGCCTGGTATCCGAGCGGTGTACCCGACTG
GCTGACTAAGAACGAGCTGACCGAGGCCAAGTTCGACGTTGATTTGGATT
ATGAGCCGGTGCAGCCAGCGTCTGAGCTAACTGCTCGCCTAAAGGAGTCC
ACCGAGCAGTTTTATGAACGTAACCATGACGTTATCCTCCAGCTATTGGA
GCAGACAACTGGAAATATTTTGGTTGTTGCCCATGCCACCACACTGGACA
CTTGTTCCCGTCAACTGACCGGTGGAGTTCCACGCAGCACGAACGAATTG
CGCCAAGTCATCCACAAGATCCCCTACTGCAGCCTGGCACGGTGGAACAG
TGGACGCGTCTGGAAGCTGGTTGAACCCGAATGTCTTCCGGTGACGCACT
CAAAGAATCCGCCGGTTCGAGTGCACGCCTTGTCGGCCCCGCAAGCTTTC
TAGACCATTCGTTTGGCGCGGGGGCCCAGGTAGTGGTCATATCATATCAT
ATCATATCATATCACACTAGCCTAGAAATCCTGTCATGACTGTGCTTGAT
CTCACATAAAACGCCGCGCAACGAACGTCTGAACAATTCAGATTGGAGTC
TGAGTCATACTGCATCCTCCACTGATC
UFO07441.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:01:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13604-RE | 3042 | CG13604-RE | 1438..2370 | 9..938 | 4530 | 99.4 | Plus |
| CG13604-RD | 2940 | CG13604-RD | 1336..2268 | 9..938 | 4530 | 99.4 | Plus |
| CG13604-RC | 2326 | CG13604-RC | 722..1654 | 9..938 | 4530 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:01:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23989771..23990470 | 708..9 | 3500 | 100 | Minus |
| 3R | 32079331 | 3R | 23989478..23989710 | 938..709 | 905 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:01:29 has no hits.
UFO07441.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:26 Download gff for
UFO07441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13604-RC | 722..1660 | 9..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:29 Download gff for
UFO07441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13604-RC | 722..1660 | 9..945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:52 Download gff for
UFO07441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13604-RC | 722..1660 | 9..945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:52 Download gff for
UFO07441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23989472..23989710 | 709..945 | 96 | <- | Minus |
| 3R | 23989771..23990470 | 9..708 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:29 Download gff for
UFO07441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19815194..19815432 | 709..945 | 96 | <- | Minus |
| arm_3R | 19815493..19816192 | 9..708 | 100 | | Minus |
