UFO07446.5prime Sequence
1057 bp (980 high quality bases) assembled on 2011-07-01
> UFO07446.5prime
CAGTCGACATGAATACATTGAGCAGTGCGCGATCTGTGGCGATTTACGTG
GGTCCCGTTCGATCTTCAAGATCAGCCTCCGTTTTGGCACATGAACAAGC
TAAATCTAGTATAACGGAGGAGCACAAGACCTACGATGAGATTCCGCGGC
CCAACAAATTCAAATTTATGAGGGCTTTCATGCCCGGTGGTGAATTCCAA
AATGCATCGATTACGGAATACACCAGTGCCATGCGAAAGCGCTATGGAGA
TATCTATGTAATGCCCGGAATGTTTGGCCGCAAGGATTGGGTCACCACTT
TCAACACAAAGGACATTGAGATGGTATTCCGCAACGAGGGTATCTGGCCA
CGTCGTGATGGCCTGGATTCCATTGTATATTTCCGCGAACACGTTCGACC
AGATGTTTACGGTGAGGTTCAAGGATTGGTGGCTTCACAAAATGAGGCAT
GGGGAAAACTACGATCAGCCATTAATCCCATCTTTATGCAACCCAGGGGC
TTGAGAATGTATTATGAACCATTGTCTAATATCAATAATGAGTTTATAGA
GCGCATTAAGGAAATCCGCGATCCAAAAACTCTAGAAGTCCCCGAAGATT
TTACGGATGAAATAAGCCGGCTTGTTTTCGAGTCACTCGGCCTGGTGGCT
TTCGATCGGCAAATGGGTCTGATTAGAAAAAACCGCGATAATTCCGATGC
ATTGACCCTCTTCCAGACCTCGAGGGATATTTTCCGTCTCACATTTAAGC
TAGACATTCAGCCCTCCATGTGGAAGATCATATCGACGCCCACCTACAGG
AAAATGAAGCGAACTCTCAATGACATTTTGAATGTGTCCCAGAAAATGCT
GAAGGAAATCAAGATGCACTGGAAAAGCGCCGCCAGGCTGGCGAAAAATA
ATAGTAACAGTATGCTGGAGAGATAATGCAAATCGATCCAAGGTGGCCGT
GATATGAGTCTGGACATCCTATTCCCTGGTGTGATGCCACAGCCACGCTC
CGGTCGGCTGTTTTACTCTGCCTCTCCAAAGCATCCGGATATAGCAGGCA
AACTGCA
UFO07446.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp12d1-d-RA | 1812 | CG33503-RA | 34..1087 | 9..1056 | 4910 | 98.3 | Plus |
Cyp12d1-p-RB | 4482 | CG30489-RB | 37..1090 | 9..1056 | 4895 | 98.2 | Plus |
Cyp12d1-p-RA | 1741 | CG30489-RA | 37..1090 | 9..1056 | 4895 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:01:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11124398..11124892 | 1041..553 | 1980 | 96.6 | Minus |
2R | 25286936 | 2R | 11120632..11121126 | 1041..553 | 1965 | 96.4 | Minus |
2R | 25286936 | 2R | 11121361..11121686 | 436..111 | 1630 | 100 | Minus |
2R | 25286936 | 2R | 11125127..11125452 | 436..111 | 1630 | 100 | Minus |
2R | 25286936 | 2R | 11121190..11121306 | 553..437 | 585 | 100 | Minus |
2R | 25286936 | 2R | 11124956..11125072 | 553..437 | 585 | 100 | Minus |
2R | 25286936 | 2R | 11121747..11121848 | 110..9 | 510 | 100 | Minus |
2R | 25286936 | 2R | 11125513..11125614 | 110..9 | 510 | 100 | Minus |
2R | 25286936 | 2R | 11123006..11123103 | 340..243 | 205 | 80.6 | Minus |
2R | 25286936 | 2R | 11126772..11126869 | 340..243 | 205 | 80.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:01:14 has no hits.
UFO07446.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:23 Download gff for
UFO07446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp12d1-d-RA | 1..1054 | 9..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:24 Download gff for
UFO07446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp12d1-d-RA | 27..1087 | 1..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:46 Download gff for
UFO07446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp12d1-d-RA | 27..1087 | 1..1056 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:46 Download gff for
UFO07446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11125127..11125452 | 111..436 | 100 | <- | Minus |
2R | 11125513..11125619 | 1..110 | 96 | | Minus |
2R | 11124383..11124891 | 554..1056 | 96 | <- | Minus |
2R | 11124956..11125072 | 437..553 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:24 Download gff for
UFO07446.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7011888..7012396 | 554..1056 | 96 | <- | Minus |
arm_2R | 7012461..7012577 | 437..553 | 100 | <- | Minus |
arm_2R | 7012632..7012957 | 111..436 | 100 | <- | Minus |
arm_2R | 7013018..7013124 | 1..110 | 96 | | Minus |