UFO07449.5prime Sequence
947 bp (899 high quality bases) assembled on 2011-07-01
> UFO07449.5prime
CAGTCGACATGGCAAAGCCAAAAGTCGGCGAATCGCTTCAGGAGCAATCA
TTAACGTTCTCAGAGGCGCCGCTAATGGCACACGAAAATGGCAAGCAGGA
GGAGCGGCCCCAGTGGAGCTGGTCCCTCAATTGGGCGGCAATCGGATCGT
CGCTTGGTGCGGCGGTTCCCGTGGGCTATTGCACAGGAGTGATGAATAGT
CCCGCTGAACTCATGCGCTCCTGGTGCAACGAGACACTGATTGCCAGCTA
TGACCTGAACTTAAGTGATGCGGGGTTGGAAATACTGTGGTCTGCCATAG
TCTCCATATTCCTCGTTGGAGGCGCCATTGGATCAGTTGTTGGAGCCACC
ATGGCCAATCGGTTCGGACGTCGCGGCTGCTTCTTCATCTGTGGCCTCCT
TCTGGGTCTGGGAGCCATTAGCTTTTACGCATGTCGACCGTTGCGTTCCG
TGGAGCTCCTTCTGCTGGGTCGGATGATGGTTGGTCTGGCCGGCGGTCTG
CTAACATCCTTTATGTCCATGTGGCACAGCGAAATCTCGGCTCTCTCCCA
GCGCAGCACCTTGGCTCCCCTCTGTCCAATGGGCTTGACCTTGGGGGTGG
TGATTGCGCAGGTCTGCAGCCTGCGCTCGGTGCTTGGAGGTCCTGAAAAC
TGGCACTTCGGCCTCGCATTCTACGGTCTTCTCGTGCTTGTGTGTTATGC
ACCTTTTTAGGTGGTATCCTGAGAGCCCCAAGTGGTTGTTCATCGTCCAA
GGTCGTAAGGAGGATGCTCGTCGCCAGCTTCACTACTAAAGGGTTACACG
GCTGGCAGCGCCGCACTGAAGGCCGAGATGGACGAAACGGAGCAAGAATT
CTGCTTGCGAGGGGAAAACCAGCAATGTGGTGAAGGTCTGGCGTGGCCCC
CATGTGCAACTTCCGCTGACTTCTATGCGCTTTCTTTGGTTGGCCGA
UFO07449.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7882-RC | 2266 | CG7882-RC | 253..1162 | 9..919 | 4215 | 97.7 | Plus |
| CG7882-RA | 1802 | CG7882-RA | 155..1064 | 9..919 | 4215 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5958185..5958893 | 210..919 | 3135 | 97 | Plus |
| 2R | 25286936 | 2R | 5958016..5958129 | 96..209 | 570 | 100 | Plus |
| 2R | 25286936 | 2R | 5957873..5957963 | 9..99 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:01:49 has no hits.
UFO07449.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:28 Download gff for
UFO07449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7882-RA | 15..891 | 1..882 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:38 Download gff for
UFO07449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7882-RA | 151..1027 | 1..882 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:00 Download gff for
UFO07449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7882-RA | 151..1027 | 1..882 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:00 Download gff for
UFO07449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5957869..5957962 | 1..98 | 95 | -> | Plus |
| 2R | 5958019..5958129 | 99..209 | 100 | -> | Plus |
| 2R | 5958185..5958856 | 210..882 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:38 Download gff for
UFO07449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1845374..1845467 | 1..98 | 95 | -> | Plus |
| arm_2R | 1845524..1845634 | 99..209 | 100 | -> | Plus |
| arm_2R | 1845690..1846361 | 210..882 | 97 | | Plus |
