UFO07451.5prime Sequence
1131 bp (977 high quality bases) assembled on 2011-07-01
> UFO07451.5prime
CAGTCGACATGCATCTGCCAGCGGGTCCAACGATGGTGGCCAACAACACA
CAGGTCCTGGCCGCTGCCGCCGCCGCAGCAGCCGCCGCAGCGGCCGCGGT
AGCCCAGGGTCCTGGGCCGCAGCAGAGTAGCAATGCCACCACCGCCTCCG
CAATCGCCATCAATCCCGCCCAGAGTCTGGCCAACACGAGCACCCACTCG
GCCAGCAGCACGGGCAGCTCCACACCAGATCTCAGCACGAACAACACCAG
CTCGAGCAGCAACGCCACCACCAGTCCGCAGAACTCCGCCAAGATGCCCA
GCTCGATGACCGACATGTTCGCCAGCCTGCACGAGATGCTGCAGGAGTAT
CACGGCGAGCTGGCCCAGACCGGATCGCCCTCGATCCTCTGCAGCGCCCT
GCCCAATCACTGGCGGTCGAACAAGTTGCTGCCCGGAGCCTTCAAGGTGA
TCGCCCTGGACGACGTGCCCGATGGCACCCTGGTGTCCATCAAGTGCGGC
AACGACGAAAACTACTGCGGCGAGCTGAGGAACTGCACCACGACCATGAA
GAACCAGGTGGCCAAGTTCAACGATCTGCGCTTCGTGGGACGATCGGGAC
GCGGCAAGTCCTTCACGCTGACCATCACCATTGCCACCTATCCGGTGCAG
ATCGCCAGCTACAGCAAAGCCATCAAGGTGACCGTCGACGGGCCACGGGA
GCCAAGAAGTAAGCAAAGCTATGGCTATCCCCATCCCGGCGCGTTTAACC
CGTTCATGCTGAATCCCGCTTGGCTGGATGCGGCGTACATGACCTACGGC
TATGCGGACTACTTCCGCCACCAGGCAGCCGCCCAGCGGCCAGTGCATCA
TCCGCACTGGCCAGTCTCGCTTCTCGTGTCGCAATCCATCATCGTGCACA
GCTCTCGTCGCGTCAGCATCTGAGTATCCCATCGCGCAGCAGTGCAGCGC
GCGGACACGCGCATGATGCATGCACGGAGCGGGCTGCAGCCTATGCATCC
GATCATCACATGTGGCGCGCACGCCGCAGCAGCCCGCCAGCCTCATCGTA
ACTTGCCGATTGTTGGGTCGATGTGCTGACACGGGGGCGTCCGTAGCCGT
CTCAGCCCATCTGCACGAACTCGGTACTACT
UFO07451.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:01:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| run-RC | 3145 | CG1849-RC | 922..1784 | 5..863 | 4185 | 99.3 | Plus |
| run-RA | 2474 | CG1849-RA | 251..1113 | 5..863 | 4185 | 99.3 | Plus |
| run-RB | 2171 | CG1849-RB | 251..1104 | 5..863 | 4040 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:01:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20694689..20695402 | 5..718 | 3540 | 99.7 | Plus |
| X | 23542271 | X | 20695811..20695929 | 718..836 | 595 | 100 | Plus |
| X | 23542271 | X | 9288353..9288560 | 385..592 | 275 | 75.5 | Plus |
| X | 23542271 | X | 20541938..20542030 | 497..589 | 210 | 81.7 | Plus |
| X | 23542271 | X | 20604130..20604203 | 571..498 | 190 | 83.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:01:58 has no hits.
UFO07451.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:29 Download gff for
UFO07451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| run-RA | 243..1124 | 1..873 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:42 Download gff for
UFO07451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| run-RA | 243..1124 | 1..873 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:03 Download gff for
UFO07451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| run-RA | 245..1126 | 1..873 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:03 Download gff for
UFO07451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20694683..20695401 | 1..717 | 99 | -> | Plus |
| X | 20695811..20695973 | 718..873 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:42 Download gff for
UFO07451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20565710..20566428 | 1..717 | 99 | -> | Plus |
| arm_X | 20566838..20567000 | 718..873 | 95 | == | Plus |
