UFO07452.5prime Sequence
1180 bp (1038 high quality bases) assembled on 2011-07-01
> UFO07452.5prime
CAGTCGACATGGAGGACATCAAGATCAAGATGGAGCCGCAGGACGAAGTG
ACGGACAGTTCAATCAGAATTCTGAGCGCATGTGATACGCTGAAAATTTT
GGACGAGGGATCTCAAATGATAACAGTGCCGATCAGGGATCGTTTGCGTT
CCGAGGACGAGCGCCTATTTATCGCCAGCCTGGAACTCGGCCACCAACAG
ATATTTGCGTCTGAATCGGAGGACAACCCAAATCCAAAACATTGCGATAT
TTGCCAGTACAAGTTTAAAAGCCAACAGGATATATCAAGTCACCGGGTTC
ATCACGAAATGAACCTACATTTTTGTCGCCTGGGCTGTGGTATCTGGCTG
GACACGCTTGAAAAGATCCTTGAGCATGAATATCGCCAGCATTTCCAGCC
AGGGCGTGTGTTGTGCTGTAGGGTTTGCGATTTTATGGCCAATAGCGCGG
ACGATCTGGCCAGCCATATGCAAAAGCACATTTACGTATATCGCTTTGTT
TGCTCCATTTGTCGTCGGCATTTTGAGTCCAAACAGAGCCTCAATCTGCA
TAGGAAGCAGAGCCAGGACTTTTGCAGCCTGCTGGATTTCAGAAAGGGGT
CATCATCAAAGCCGGAACTTGTGGCAGTTAGTACGCCGGTACCTGAAGAG
TCGAATTGCTATGTGCAAATAAAAGAAGAGCCACTTAACGCAGAGGAAGC
AGACCGAATGCTATTGGAAGACAACCCTCCACTCAATGTAAAATTGGAAC
CACAGGACGAGGAAATGCCAGATGTGAGTAGGATTAAGGAGGAACAGTCA
AATGGTAGCGTCTGGACAGCCATACATACTCCGTTGAGGAATAAACTGCG
CCTGCCTGCTCTGGCCACTACCAAAAATCAGATGCACTTAAACCAGGTGT
TAAGCGAAATGGACTACTAACGTCTAATGTGGAATCTCTTAACAGAAATC
GCATCACTCAGGTGATATCCGATGATGCGAATATTCCCGATTTCCACCAG
GACCTTCAAATTCCTCAATTGAAGCAATATACTTGAAAGGTGTTACCTAG
TAACTGCATGGTCATCAAGTGCTCCAACCAAAAATTTTAAACGCCAGGTC
AGGCTCCGGCTGGCCCTAGGACCTCTCCACGTACTCTGGAGTTTACGGAA
TTCACAGTCTAAAGATTCCGAAACACAATA
UFO07452.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:02:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10462-RE | 3148 | CG10462-RE | 142..1271 | 6..1128 | 5160 | 98 | Plus |
| CG10462-RA | 3154 | CG10462-RA | 142..1271 | 6..1128 | 5160 | 98 | Plus |
| CG10462-RD | 3151 | CG10462-RD | 142..1268 | 6..1128 | 5125 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:02:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19734472..19734942 | 892..422 | 2355 | 100 | Minus |
| 2L | 23513712 | 2L | 19734998..19735224 | 424..198 | 1135 | 100 | Minus |
| 2L | 23513712 | 2L | 19735512..19735634 | 200..78 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 19734236..19734412 | 1070..894 | 470 | 90.6 | Minus |
| 2L | 23513712 | 2L | 19735767..19735839 | 78..6 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:02:02 has no hits.
UFO07452.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:30 Download gff for
UFO07452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10462-RA | 105..1299 | 1..1179 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:44 Download gff for
UFO07452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10462-RA | 137..1331 | 1..1179 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:05 Download gff for
UFO07452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10462-RA | 137..1331 | 1..1179 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:05 Download gff for
UFO07452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19734470..19734941 | 423..893 | 99 | <- | Minus |
| 2L | 19735000..19735221 | 201..422 | 100 | <- | Minus |
| 2L | 19735512..19735633 | 79..200 | 100 | <- | Minus |
| 2L | 19735767..19735842 | 1..78 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:44 Download gff for
UFO07452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19735512..19735633 | 79..200 | 100 | <- | Minus |
| arm_2L | 19735767..19735842 | 1..78 | 96 | | Minus |
| arm_2L | 19734470..19734941 | 423..893 | 99 | <- | Minus |
| arm_2L | 19735000..19735221 | 201..422 | 100 | <- | Minus |
