UFO07454.5prime Sequence
1103 bp (993 high quality bases) assembled on 2011-07-01
> UFO07454.5prime
CAGTCGACATGTTCCGGAGTCGCAGCTGGTTTGGCGGACCCTGGGGTGGG
CGGCCCAAAAACCGCTTGTCGCTGGAGCACCTTAAGTACCTGTACAGCAT
TCTGGAGAAGAACACCACCGTGTCGGAAAGTAATCGTGGCCTGCTGGTGG
AGTCGCTGCGCTGCATCGCAGAGATCCTGATTTGGGGCGACCAGCATGAC
TCGCTGGTGTTTGACTTCTTCTTGGAGAAGAATATGCTATCGTATTTCCT
GCACATAATGCGACAAAAGAGTGGAGGCTCGAGTTTCGTCTGCGTGCAGC
TCCTTCAGACTCTCAACATCCTCTTTGAGAACATACGCAACGAGACGTCC
CTGTATTATCTGTTGAGCAACAACCATGTAAATTCTATCATGGTGCACAA
GTTTGACTTCTCCGACGAGGATGTGATGGGCTATTATATACTTTTTTTAA
AGACGCTAAGTCTAAAGTTAAACACTCACACAATACACTTCTTTTACAAT
GAGCACACAAATGACTTTCCCTTGTATACGGAGGCTATTAAGTTCTTTAA
TCATCCCGAGTCAATGGTGAGAATTGCAGTGCGCACCATTTCCTTAAATG
TCTACAAGGTTCAAAATCCAAGCATGTTGCGTTTTATTCGAGACAAAACG
GCTGCTCCATATTTCAGTAATCTGGTCTGGTTTATCGGCAAACACATTCT
TGAACTAGACACTTGTGTTCGCACAGATATAGACCATCAATCGAATCAAA
AGCTGTCCAATTTGGTTGCCGAGCATCTGGATCATTTGCATTATTTGAGT
GACATTCTTCTACTGGAAATCAAAGGATCTGAACGCGGTGTTAACCGAGC
ACTTGCTGCATAAGCTATTCGTGCCTCTGTACATATTCTCACTTACACCA
GCTCCGCCCCCGCCCTCACTGGGAAGTGGTTACCCAAATCTAGCTGCTGT
GCTTAATTCGCAATGTGGACATCGACATACAGAAATGCACAATCGCGAGT
GAGCTCCATCGTGCCCCTTTTCTGCTTCTCATGATCTTTCTGGTATTCGC
ATGCCCTCTGGTGCAGCTCTGCTGGTATCTCAATGGTGACCAACGGTTTA
GAG
UFO07454.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:02:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ema-RC | 3473 | CG12753-RC | 242..1337 | 7..1092 | 4975 | 97.7 | Plus |
| ema-RB | 3383 | CG12753-RB | 242..1337 | 7..1092 | 4975 | 97.7 | Plus |
| ema-RA | 3590 | CG12753-RA | 242..1337 | 7..1092 | 4975 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:02:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16440115..16440403 | 1022..734 | 1115 | 96.9 | Minus |
| 3R | 32079331 | 3R | 16441213..16441420 | 214..7 | 1040 | 100 | Minus |
| 3R | 32079331 | 3R | 16440808..16440956 | 503..355 | 745 | 100 | Minus |
| 3R | 32079331 | 3R | 16440608..16440752 | 646..502 | 710 | 99.3 | Minus |
| 3R | 32079331 | 3R | 16441020..16441159 | 354..215 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 16440465..16440551 | 733..647 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:02:11 has no hits.
UFO07454.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:31 Download gff for
UFO07454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ema-RB | 235..1349 | 1..1103 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:49 Download gff for
UFO07454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ema-RA | 236..1350 | 1..1103 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:07 Download gff for
UFO07454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ema-RA | 236..1350 | 1..1103 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:07 Download gff for
UFO07454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16440022..16440403 | 734..1103 | 92 | <- | Minus |
| 3R | 16440465..16440551 | 647..733 | 100 | <- | Minus |
| 3R | 16440608..16440750 | 504..646 | 99 | <- | Minus |
| 3R | 16440808..16440956 | 355..503 | 100 | <- | Minus |
| 3R | 16441020..16441159 | 215..354 | 100 | <- | Minus |
| 3R | 16441213..16441422 | 1..214 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:49 Download gff for
UFO07454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12266530..12266678 | 355..503 | 100 | <- | Minus |
| arm_3R | 12266742..12266881 | 215..354 | 100 | <- | Minus |
| arm_3R | 12266935..12267144 | 1..214 | 98 | | Minus |
| arm_3R | 12265744..12266125 | 734..1103 | 92 | <- | Minus |
| arm_3R | 12266187..12266273 | 647..733 | 100 | <- | Minus |
| arm_3R | 12266330..12266472 | 504..646 | 99 | <- | Minus |
