UFO07455.5prime Sequence
1113 bp (1013 high quality bases) assembled on 2011-07-01
> UFO07455.5prime
CAGTCGACATGGCGGCGTTGGAACATCCGGATGCCATGCTGCCATACTCC
AAATTGTTGTCAACAGCCCTCACTGTGGCCAGTGGTAACTCGAACTCCTC
CGATGGTACTTTGCTGCTCATCCAGACCAGTGCGGCACCAGGTGGCGATG
TGATGGCCACCGGAGCCGGAGCCGGAAAGTTGGGTGTGCCCTCGATGAAC
TCGTACCTGGTGAGCATGGCGTGGCCCAAGTCGCTGGCAGTGGCCGTCTT
CCTGGTCATCATCCTGGTCACCGTGGTGGGCAACACACTCGTCATCCTCG
CCGTTCTGACCACACGCCGCCTGCGCACCGTAACCAACTGTTTCGTGATG
AACTTGGCCATCACCGACTGGCTGGTCGGCACCTGCGTGATGCCTCCATC
GGTGGTGCTCTACATAACAGGCACTTGGCGCTTTGGCTGGATACTGTGCG
ACATTTGGATCTCGCTGGACATCCTGCTCTGCAGCGGCTCCATCCTCAGC
CTGTGCGCCATCAGTCTGGACAGGTATCTCGCCGTCACACAACCACTGAC
GTACTCCAAGAAGCGCCGATCCAAGCGACTGGCCCTCCTCATGATTCTCG
TCGTGTGGATAACTGCCCTGTCAATCACATGTCCACCCTATTTGGGCTGG
TACGAGGTCGGTCGGCACCAGGCGGAGTTCGTGGACTGCCGCTACAACCA
AAACAAGGGCTACGTGGTCTTCTCGGCGATGGGATCGTTCTTCATTCCCC
TCACCGTGATGCTCTACGTTTACGTGAAGATTGGTTATGTCCTCACGTCA
CGGCGACAGCGCATTGTGCGCGATGCGTACTCGGAGCGCACGGCAGACTA
CGATGTGGATGGGGACAACTTCATCTCGGAGTCGGAGCACTATCATTGCA
CGCCAACCAAGTGGCTGCCGAACAGGAAGTCCCGCTGGAGGTTCAACTCC
CTGCAAGACCCACCACCCACGGCGGCACGAATGCAGCAGCGAAGGGACAC
CAGTCGTCCGTCAAGTGCTCCAGTGCTCCAAGTGCTCCCTCTGCACTGAA
CTGCTGGAGCTGGAGCTGGACTGGTGTGGTAACAAACCCTGACGTTCACA
TCAGCCACTTAGA
UFO07455.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:02:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TyrRII-RD | 4089 | CG16766-RD | 778..1884 | 8..1106 | 5240 | 98.7 | Plus |
| TyrRII-RC | 2812 | CG16766-RC | 778..1884 | 8..1106 | 5240 | 98.7 | Plus |
| TyrRII-RB | 2313 | CG16766-RB | 140..1246 | 8..1106 | 5240 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:02:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17739934..17740347 | 8..421 | 2070 | 100 | Plus |
| 3R | 32079331 | 3R | 17744978..17745236 | 827..1081 | 975 | 95.4 | Plus |
| 3R | 32079331 | 3R | 17744122..17744300 | 649..827 | 895 | 100 | Plus |
| 3R | 32079331 | 3R | 17741708..17741839 | 521..652 | 660 | 100 | Plus |
| 3R | 32079331 | 3R | 17741003..17741110 | 418..525 | 540 | 100 | Plus |
| 3R | 32079331 | 3R | 17755180..17755270 | 525..435 | 260 | 85.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:02:15 has no hits.
UFO07455.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:32 Download gff for
UFO07455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TyrRII-RA | 334..1447 | 1..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:51 Download gff for
UFO07455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TyrRII-RA | 334..1447 | 1..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:09 Download gff for
UFO07455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TyrRII-RB | 133..1246 | 1..1106 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:09 Download gff for
UFO07455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17739927..17740346 | 1..420 | 99 | -> | Plus |
| 3R | 17741006..17741108 | 421..523 | 100 | -> | Plus |
| 3R | 17741711..17741836 | 524..649 | 100 | -> | Plus |
| 3R | 17744123..17744300 | 650..827 | 100 | -> | Plus |
| 3R | 17744979..17745233 | 828..1078 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:51 Download gff for
UFO07455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13565649..13566068 | 1..420 | 99 | -> | Plus |
| arm_3R | 13566728..13566830 | 421..523 | 100 | -> | Plus |
| arm_3R | 13567433..13567558 | 524..649 | 100 | -> | Plus |
| arm_3R | 13569845..13570022 | 650..827 | 100 | -> | Plus |
| arm_3R | 13570701..13570955 | 828..1078 | 96 | -> | Plus |
