UFO07456.5prime Sequence
1156 bp (1055 high quality bases) assembled on 2011-07-01
> UFO07456.5prime
CAGTCGACATGGAAATTTTGCGAACGAAACTAGAGGCCTGCCTGCTGATA
CTGAACAGGAACAATGCAGCAGCTGCAAACTGGCTGAATGACCTGTGCGC
CGTGCTATTGGAATTCGCTACTTTGGCCCACAGCTCCTTCTGCTCCCAGG
GGCAGTCGGAGTGCTCGGAGCTGGTGTGCCTCTGCCTCAGCCAGATTATG
ATCTGCATTCGCCAAGTGGAGAACACCATGAAACTAGAATGCGGCACCAC
AGTCTCGGTAAGTCATCAGTACTTCCTGGACCGCATTCGCTGGTGCCTGA
AGCGCCTCATGCATCTTTACAGCGAAGAATCGAGTTCCGAAGCAGTAGCT
CCGGAGCGCTCGTTCCTTAAGCTGGTGGATGGCGCATTGGATTGTTTGGC
GCAGTTCACCTCGCACAGTGAGGAAAACACCGATACCTCCAACTGTCCAA
AGACTCCCAAGGAAGTCCTTCCACTCAGCCAGAAGTTGCGCGCCAACATT
GATTTGATCTTGGGTCAATCTCTGGGATTCGCCAATGTGGCTTTGTCTCA
GGACAAGAGGGCTCTCAGTGCCTTGTGCCAAAAGGTCATCCGGGAGTGCA
ATGCCTTTCAGGAGGAGTGCAAGGAGTCATTCAGTGCCAACTACCTGTCC
ACCCTTAAGCTGCGGGCCATGACCATGGAACAGGCAATTTACCAATTGGA
GGACTTTATCAACGATGCGCTTTTGCGCTTGGTATTCACATGCTTCCTGG
ACTTCGAGAAGTTTTCGGTAGACAAAATTAGAGCGCTGTTAAGGAACAGC
CCAGATAATGATGATCTGGCCGATGAGTTCATAGCGGACTTTGATGTGAA
CATAGATCGCGCCACCCAGATAGGCATTTTTGCCATTTCCTTTGCGCCCA
ACTTGAAAATGAAAACCATAATGCGCAGCTGTCTGGCCTCCTTTGAATCA
CTGGACACCACTCTGATACCTTCACTGCAGCCCATGGTTCCGATTTGCAC
TCGGACATCCTAGAGCAGCACTTTAACGAGGGAGGTGGCCAAGTCAAGCA
GCGCTTCAGGAGATCATCGAAGCCGGCGCCCCTCGTGTTGTGCCTGGAGA
TCCTGACTCCAGGATATTGCACGACAGCTTCGATAGCATCGAATGGAGAC
TGGTTC
UFO07456.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:02:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spt-RB | 2119 | CG8247-RB | 107..1209 | 9..1107 | 5275 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:02:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8921951..8922280 | 586..257 | 1650 | 100 | Minus |
| 2R | 25286936 | 2R | 8921572..8921898 | 909..583 | 1635 | 100 | Minus |
| 2R | 25286936 | 2R | 8922333..8922506 | 263..90 | 855 | 99.4 | Minus |
| 2R | 25286936 | 2R | 8921345..8921507 | 1070..910 | 625 | 96.3 | Minus |
| 2R | 25286936 | 2R | 8922568..8922649 | 90..9 | 410 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:02:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 2892..2946 | 26..80 | 113 | 67.3 | Plus |
UFO07456.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:33 Download gff for
UFO07456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8247-RB | 103..1185 | 9..1091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:53 Download gff for
UFO07456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8247-RB | 107..1189 | 9..1091 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:10 Download gff for
UFO07456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt-RB | 107..1189 | 9..1091 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:10 Download gff for
UFO07456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8921323..8921507 | 910..1091 | 95 | <- | Minus |
| 2R | 8921572..8921896 | 585..909 | 100 | <- | Minus |
| 2R | 8921953..8922279 | 258..584 | 100 | <- | Minus |
| 2R | 8922339..8922506 | 90..257 | 100 | <- | Minus |
| 2R | 8922569..8922649 | 9..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:53 Download gff for
UFO07456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4808828..4809012 | 910..1091 | 95 | <- | Minus |
| arm_2R | 4809077..4809401 | 585..909 | 100 | <- | Minus |
| arm_2R | 4809458..4809784 | 258..584 | 100 | <- | Minus |
| arm_2R | 4809844..4810011 | 90..257 | 100 | <- | Minus |
| arm_2R | 4810074..4810154 | 9..89 | 100 | | Minus |
