UFO07458.5prime Sequence
1108 bp (982 high quality bases) assembled on 2011-07-01
> UFO07458.5prime
CAGTCGACATGTTGTTCGCCAGAACCACCTCGTCCACGTCGATCAGTCCG
CCCGCGATGATGATGCAGCAGCACCAGCAGCAGCAGCAGCAGCAGGATCC
TCAGAAGCTGGGACAGCAATTCCATCAGCAGCCAGCATTTCAGCTACAGC
AAAGCTTCTGTGAGTCAGTTTGTTCTGGAATTGAGGTTGAAATTGAAAAT
AATAACAATAATCATATTCATCATGGCGAGACAACGTATCACATGAAAAT
ACTGGTGCCCGCGGTGGCCTCCGGGGCCATCATTGGCAAAGGTGGCGAGA
CGATCGCCTCCCTGCAGAAGGACACGGGTGCTAGGGTCAAGATGTCCAAG
TCGCACGACTTCTACCCAGGCACCACCGAACGCGTGTGCCTGATCACCGG
CTCCACGGAGGCTATCATGGTCGTGATGGAGTTCATCATGGACAAGATCC
GCGAGAAGCCCGACCTGACCAACAAGATCGTCGATACCGACTCAAAACAG
ACACAGGAGCGCGACAAGCAGGTCAAGATCCTGGTGCCCAACTCGACCGC
CGGCATGATCATTGGCAAGGGCGGTGCCTTCATTAAACAGATCAAGGAGG
AGAGCGGCTCCTATGTCCAGATCTCGCAGAAGCCCACGGATGTGTCGTTG
CAGGAGCGCTGCATCACCATCATAGGCGACAAGGAGAACAATAAGAACGC
CTGCAAGATGATCCTCTCGAAGATCGTCGAAGATCCCCAGTCGGGCACCT
GCCTGAACGTATCCTACGCGGACGTCAGCGGCCCGGTGGCCAACTTTAAT
CCGACCGGCTCCCCGTACGCCACCAATCAGAATGCCATCAACTCGAGCAC
CGCTTCGTTGAACTCCACGTTGGGCACCACGATCGGCGGTGCAAACTCGC
GGCCAGCCTGCTAGTCAACGGCACCGGGCATCAATTTGTCCATCAATCTG
GGCCTCACCCATTCCGGCGCCATCTAGCGTGCCCACCACTGCTCGAGCAT
ATAGGTTGCATGCCGCCTCTGCTTATTCGGAGACGTACGAACGAATTGTC
ACACCTTGAGGTAGCTCTATGGCAAGTACCGCGCGTCCCTTGGAATGGGG
CGTGGGGT
UFO07458.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ps-RD | 2685 | CG8144-RD | 133..1186 | 8..1050 | 4845 | 98 | Plus |
| ps-RI | 4635 | CG8144-RI | 133..1186 | 8..1050 | 4845 | 98 | Plus |
| ps-RR | 3624 | CG42670-RR | 1224..2125 | 160..1050 | 4085 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:01:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9445252..9445855 | 367..971 | 2865 | 99.3 | Plus |
| 3R | 32079331 | 3R | 9436967..9437120 | 8..161 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 9445043..9445188 | 225..370 | 730 | 100 | Plus |
| 3R | 32079331 | 3R | 9444011..9444077 | 160..226 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:01:44 has no hits.
UFO07458.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:27 Download gff for
UFO07458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RD | 127..1131 | 1..1002 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:36 Download gff for
UFO07458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RI | 127..1131 | 1..1002 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:58 Download gff for
UFO07458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ps-RI | 127..1131 | 1..1002 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:58 Download gff for
UFO07458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9436961..9437118 | 1..159 | 98 | -> | Plus |
| 3R | 9444011..9444076 | 160..225 | 100 | -> | Plus |
| 3R | 9445044..9445187 | 226..369 | 100 | -> | Plus |
| 3R | 9445255..9445891 | 370..1002 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:36 Download gff for
UFO07458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5262683..5262840 | 1..159 | 98 | -> | Plus |
| arm_3R | 5269733..5269798 | 160..225 | 100 | -> | Plus |
| arm_3R | 5270766..5270909 | 226..369 | 100 | -> | Plus |
| arm_3R | 5270977..5271613 | 370..1002 | 98 | == | Plus |
