UFO07464.5prime Sequence
1146 bp (1046 high quality bases) assembled on 2011-07-01
> UFO07464.5prime
CAGTCGACATGCCAGATAGATTTCAAGTTACAAAGGCTGACGAGGACACC
GCGTTGGACTACAACCAGGATGAGTCTGCGAGCGGCAAGCTACTGGGGGA
CATCCACGACGAAACCCTAGGTGAGAACTATGGGTCGTACGATGACTCAG
GTGATATCCACAGGGCGGAGGAGAACCAGAAGTCCAGCATCGACCCAAAT
CTATATCTGTACGACGATGATTTGGAGACCAGGCCCCATATATCAACGTT
CATTTCATCAATTGCCAATTATGAGAACACGATACCAGCGGCCACCGATC
CCGATGCAAAGCCGGCAGCTCCATCGGCTCGAATGGGTACCCTAATTGGA
GTGTTCTTGCCATGCATTCAAAACATCTTTGGTGTCATATTGTTCATTCG
GTTAACATGGGTTGTTGGAACGGCTGGCGCCGTGTGTGGATTCCTGATTG
TTCTGACCTGCTGCTGTGTGACCATGCTAACCGCGATCTCGATGTCGGCC
ATTGCAACGAACGGGGTGGTTCCGGCGGGCGGGAGTTACTTCATGATATC
ACGATCCCTGGGCCCTGAATTCGGCGGAGCGGTGGGAATGTTGTTCTATA
CGGGCACCACGCTAGCAGCGGCGATGTACATCGTTGGTGCCGTGGAAATC
GTATTGACATACATGGCGCCGTGGGCATCGATATTTGGGGACTTCACCAA
GGACGCTGACGCGATGTACAACAATTTCAGGGTCTACGGCACTTTGCTGC
TCATCTTTATGGGTCTCATTGTGTTCCTGGGCGTGAAATTCGTCAATAAG
TTCGCGACGGTGGCCCTGGCCTGCGTCATCCTTTCGATAATAGCGGTGTA
TGTGGGAATATTTGACAATATCCATGGCAACGAAAAGCTATACATGTGTG
TTCTGGGAAAACGACTCTTGAAAGATATCCCGCTGGAGATTGCACAAAGG
AAGACTCCTTCTTACGCGACATATACTGCCAGATGGTAAATGCGAGGATA
CTACTGGCAATACGTGACAAAGTCAGGCATCAAGGGTTTGCCAGTGGCGT
GTCTACGACACTCTCATCGTCTTGAGAACGCAGTCATCTACGCAGATGCA
ATGACATGAACCTATTGAAGTCTACACGATCTGCGAATACCGTCGT
UFO07464.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kcc-RD | 3883 | CG5594-RD | 502..1564 | 9..1060 | 5035 | 98.9 | Plus |
| kcc-RA | 3543 | CG5594-RA | 255..1317 | 9..1060 | 5035 | 98.9 | Plus |
| kcc-RE | 4154 | CG5594-RE | 773..1835 | 9..1060 | 5035 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23911676..23911871 | 144..339 | 980 | 100 | Plus |
| 2R | 25286936 | 2R | 23909698..23909833 | 9..144 | 680 | 100 | Plus |
| 2R | 25286936 | 2R | 23912187..23912321 | 336..470 | 675 | 100 | Plus |
| 2R | 25286936 | 2R | 23912896..23913026 | 762..892 | 655 | 100 | Plus |
| 2R | 25286936 | 2R | 23912728..23912836 | 656..764 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 23912531..23912634 | 553..656 | 520 | 100 | Plus |
| 2R | 25286936 | 2R | 23913086..23913193 | 893..998 | 425 | 97.2 | Plus |
| 2R | 25286936 | 2R | 23912383..23912466 | 470..553 | 420 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 00:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 2316..2357 | 854..895 | 120 | 76.2 | Plus |
UFO07464.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:37 Download gff for
UFO07464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RD | 525..1592 | 9..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:06 Download gff for
UFO07464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RE | 773..1840 | 9..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:18 Download gff for
UFO07464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kcc-RE | 773..1840 | 9..1068 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:18 Download gff for
UFO07464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23912532..23912634 | 554..656 | 100 | -> | Plus |
| 2R | 23912729..23912834 | 657..762 | 100 | -> | Plus |
| 2R | 23912897..23913026 | 763..892 | 100 | -> | Plus |
| 2R | 23913086..23913204 | 893..1007 | 95 | -> | Plus |
| 2R | 23912188..23912321 | 337..470 | 100 | -> | Plus |
| 2R | 23912384..23912466 | 471..553 | 100 | -> | Plus |
| 2R | 23909698..23909833 | 9..144 | 100 | -> | Plus |
| 2R | 23911677..23911868 | 145..336 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:06 Download gff for
UFO07464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19800420..19800549 | 763..892 | 100 | -> | Plus |
| arm_2R | 19800609..19800727 | 893..1007 | 95 | -> | Plus |
| arm_2R | 19797221..19797356 | 9..144 | 100 | -> | Plus |
| arm_2R | 19799200..19799391 | 145..336 | 100 | -> | Plus |
| arm_2R | 19799711..19799844 | 337..470 | 100 | -> | Plus |
| arm_2R | 19799907..19799989 | 471..553 | 100 | -> | Plus |
| arm_2R | 19800055..19800157 | 554..656 | 100 | -> | Plus |
| arm_2R | 19800252..19800357 | 657..762 | 100 | -> | Plus |
