UFO07467.5prime Sequence
1140 bp (1001 high quality bases) assembled on 2011-07-01
> UFO07467.5prime
CAGTCGACATGTCCACATCCACCGCCACAACGAGCGTTATCACGTCCAAC
GAGCTCTCGCTGTCCGGCCACGCCCACGGTCACGGTCACGCCCACCAGTT
GCACCAGCACACCCACAGCCGCCTAGGAGTTGGCGTTGGTGTTGGCATCC
TTAGCGACGCATCCCTATCGCCCATCCAACAAGGCAGTGGCGGCCACAGC
GGCGGAGGTAACACAAACAGTTCACCACTGGCGCCCAACGGAGTGCCACT
TCTCACAACAATGCACCGATCACCGGACTCACCGCAGCCAGAATTGGCCA
CCATGACGAACGTCAACGTGCTGGATCTGCACACGGATAACTCCAAGCTG
TACGACAAGGAGGCTGTATTTATATACGAAACGCCCAAGGTGGTGATGCC
AGCGGATGGCGGGGGTGGCAATAATTCCGATGAAGGTCATGCCATCGATG
CGCGGATTGCGGCCCAAATGGGCAACCAAGCCCAGCAACAGCAGCAGCAG
CAACAGCAGACGGAACACCAGCCGCTGGCCAAGATCGAGTTCGATGAGAA
CCAGATAATCCGGGTGGTGGGACCAAATGGCGAGCAACAGCAAATCATCT
CGCGGGAGATCATCAATGGGGAGCATCATATCCTGTCGCGAAACGAGGCT
GGTGAGCACATTCTCACACGGATCGTCAGTGATCCCTCCAAGTTGATGCC
CAATGACAATGCAGTGGCCACGGCCATGTACAACCAGGCCCAAAAGATGA
ACAATGATCACGGGCAGGCGGTATATCAGACATCACCATTGCCGCTAGAC
GCGTCTGTATTGCATTATAGTGGCGGCAATGATTCGAATGTAATTAAGAC
GGAGGCCGATATCTACGAGATCACAAGAAACATGCGGCTGCAGCAGCAGC
TGCTGCCGGCGGAGGATCCATCATATACACCACATCCGATTCGAACGAAG
TGAATGTGAAACAACTGCCCATTTGACGGTACCCCAAAAACTTGATCCCG
ACCTCTATCAAGCGATAAGCATATAGATTTGATTTACACGATGGCAGCAG
ACGGTGATTACTCCCCTACGATCGAGAGTTGGAATTACTCGGCGCGACTC
GCAGCTGTGTCGACGCATGTGGTCCAGCGCATGCGTTTGC
UFO07467.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:03:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| grh-RP | 6230 | CG42311-RP | 2300..3367 | 9..1070 | 5130 | 99.1 | Plus |
| grh-RL | 6692 | CG42311-RL | 838..1905 | 9..1070 | 5130 | 99.1 | Plus |
| grh-RH | 3972 | CG42311-RH | 838..1905 | 9..1070 | 5130 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:02:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17808411..17809466 | 9..1059 | 4985 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:02:58 has no hits.
UFO07467.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:38 Download gff for
UFO07467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grh-RH | 908..2001 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:11 Download gff for
UFO07467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grh-RJ | 1451..2544 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:23 Download gff for
UFO07467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| grh-RH | 830..1923 | 1..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:23 Download gff for
UFO07467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17808403..17809496 | 1..1084 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:11 Download gff for
UFO07467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13695908..13697001 | 1..1084 | 98 | | Plus |
