UFO07468.5prime Sequence
1161 bp (1022 high quality bases) assembled on 2011-07-01
> UFO07468.5prime
CAGTCGACATGGAAATACCCATTCAGGTAGCGGTGCGCATCTTCCCGCAT
AGAGAGCTCAAGGACTTGTTGAGGAGCTTCGGCCCCACAGAGCCCAAAAA
GGATGCGCAGGCGGTGGATGAGGGGGCGGACTCCAAGGACTCCGAGGCTC
AAGTTCCGGCGGCTGAGAAGGACAATCCGTCAATTTCAGAGACGGACCCA
AACGGGAATGCTGAGCAGGACAGTGCGGCCGATTCGAAGACAATTCCAGA
TGCCAATGGCAACGACAGTGGTCAGAAGGATTACCCAGACTCCGCATATT
GCGTTCAGGCTATTCCCATCAGCGCTTCGGCCCTGGGATTGCCCAGTGCC
CTGCCAGGCGGAGATCCCATGGACAGCATTGCAGCTGGACTGATACAAGT
CGGTCCCCACACGGTTCCGGTCACCCACGCCCTGCCCAGCAGCAGCTCCC
AGGAGCAAGTGTACCACCAGACGGTCTTTCCGCTCATCACCCTGTTCCTG
GAAGGTTTCGACGCATCTGTAGTCACCTATGGCCAGAGGGGCCAGGGCAA
AAGCTACACACTCTACGGAAACGTCCAGGACCCTACTCTGACGGATTCCA
CCGAAGGAGTCGTCCAACTTTGTGTCCGTGACATTTTCTCACACATATCG
TTGCACCCAGAACGCACCTATGCCATCAACGTGGGATTCGTGGAAATTTG
CGGAGGTGATGTCTGCGACTTGTTGGGCATGGGAAACATACACTGCACCA
ACGTAGATGCCGTCTTCCACTGGTTGCAGGTGGGTCTGTCGGCCCGCCAA
TCGTTGCCGGCGCACACCCTGTTCACGCTTACCCTGGAGCAGCAGTGGGT
GTCAAAGGAGGGGCTGTTGCAGCACCGCTTGTCCACGGGCAGTTTCTCGG
ATCTCTGCGGCACAGAGAGATGTGGGAGACAGCACGGGACGTCTCTCGAT
GCTGCTGTGTATGCTGAGCAGTGATCAGTACTCTCAAGATCAGGCCTCAT
GTACGGGTATGCACATCGTACGTCACACGCTCACATCTCTGAGATCGTCG
CGACGTCAGCTTGGATCTTGCGGCCGTGAAGCTGCGACTTGACTGATCCT
AGGCAGGACGATTGATGACCTATCCAAACCAGACTACGTGACCGTCATAT
TCTGGACTGCA
UFO07468.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cos-RB | 4416 | CG1708-RB | 136..1144 | 8..1007 | 4755 | 98.7 | Plus |
| cos-RA | 4763 | CG1708-RA | 136..1144 | 8..1007 | 4755 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:03:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7386328..7386980 | 660..8 | 3265 | 100 | Minus |
| 2R | 25286936 | 2R | 7386005..7386271 | 925..659 | 1305 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:03:04 has no hits.
UFO07468.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:39 Download gff for
UFO07468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cos-RA | 130..1141 | 1..1007 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:13 Download gff for
UFO07468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cos-RA | 133..1144 | 1..1007 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:25 Download gff for
UFO07468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cos-RA | 133..1144 | 1..1007 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:25 Download gff for
UFO07468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7385914..7386269 | 661..1007 | 96 | <- | Minus |
| 2R | 7386328..7386983 | 1..660 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:13 Download gff for
UFO07468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3273419..3273774 | 661..1007 | 96 | <- | Minus |
| arm_2R | 3273833..3274488 | 1..660 | 99 | | Minus |
