UFO07471.5prime Sequence
1117 bp (1002 high quality bases) assembled on 2011-07-01
> UFO07471.5prime
CAGTCGACATGTCACATGATAAGAAGATGTTGGATCGCGAGGCAGTACGC
TCAGTGATACAGCAATGGAATGCCAATCGATTGGATCTATTTGCTCTCTC
CGAGCCAGACGAGAACCTGCTCTTCCATGGCGTTATGCGCTTCTACTTCC
AAGATGCTGGCCAGAAAGTGGCCACCAAATGCATTCGCGTGGCTTCCGAT
GCCACTGTCACAGATGTCATAGACACACTCATTGAGAAATTCCGTCCCGA
TATGCGGATGCTATCCGTGCCCAACTACGCCCTTTACGAAGTGCACGCCA
ATGGCGAGGAGCGTCGTCTCAATGCCGACGAGAAGCCACTGCTGGTGCAG
CTGAATTGGCATATTGACGATCGCGAAGGTCGATTCCTGCTCAAGAACAT
AGACCAAAAGACCACTCCCATCGAGCAGACAGATCTAAACTTTAAGAGAA
AACTTTCGAAGCGAGAGAAAAAGGAGCAGAAGAAAAAGGAGAAGATGGCA
AAGCTGAGCTCTGATCCGCCCACCTCGAATGGCAGTCATCTGGGCTTGGG
AAATGGTGTTGGAGCATCCTCGGGATCTGCCCACATGAATGGAAACGCCG
GTGGAACTGGAGGCGACAGCAGCGATGCAGTGGCAGGAAAACTGTACACG
GAACTACCAGAAACCTCGTTCACCCGATCGATCTCAAACCCGGAGGCCGT
GATGCGGCGGCGCCGGCAGCAGAAGCTCGAGAAGAAGCTGCAGCAGTTCC
GTTCTAGGGATGGTGGTCCCGATACCGGTGGCACGTTGAAGATTTACGGC
GAGAGCCTCTGTCAGGACGTGCCCTACAAGACGCTGCTGCTTTCCATCCG
GGATTGTGCGCAGGCTGTGTTCGGGAAATGCTCACAAATACGGTCTAGAA
AGGCCGATCCCCTGCACTATTGCCTGCTTCAGGTCAACAGCGACGGAACA
GAATATTACTCGACGACGACGAGTGCCGCTGTCGAATACTGATGACATCG
ACGTCACGAGCTCCATCATGTCATGTGCGGGACGTTCGCGGACTCCAGGC
CGGAGGAAAAGGAAAAACACTGGGGCGGCAAACGAGCGACTAGTATCGGA
AATCGGAGTACGTCTGT
UFO07471.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cno-RI | 9118 | CG42312-RI | 631..1723 | 9..1084 | 4940 | 97.8 | Plus |
| cno-RH | 6738 | CG42312-RH | 631..1723 | 9..1084 | 4940 | 97.8 | Plus |
| cno-RG | 6687 | CG42312-RG | 631..1723 | 9..1084 | 4940 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:02:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5202066..5202586 | 934..417 | 2440 | 99.2 | Minus |
| 3R | 32079331 | 3R | 5202660..5202856 | 416..220 | 985 | 100 | Minus |
| 3R | 32079331 | 3R | 5203050..5203160 | 222..112 | 555 | 100 | Minus |
| 3R | 32079331 | 3R | 5203224..5203328 | 113..9 | 525 | 100 | Minus |
| 3R | 32079331 | 3R | 5201681..5201729 | 977..930 | 195 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:02:30 has no hits.
UFO07471.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:34 Download gff for
UFO07471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cno-RE | 596..1648 | 1..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:57 Download gff for
UFO07471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cno-RG | 627..1679 | 1..1045 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:12 Download gff for
UFO07471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cno-RG | 627..1679 | 1..1045 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:12 Download gff for
UFO07471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5202660..5202853 | 223..416 | 100 | <- | Minus |
| 3R | 5203050..5203158 | 114..222 | 100 | <- | Minus |
| 3R | 5203224..5203332 | 1..113 | 96 | | Minus |
| 3R | 5201681..5201726 | 933..977 | 97 | <- | Minus |
| 3R | 5202068..5202586 | 417..932 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:57 Download gff for
UFO07471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1027403..1027448 | 933..977 | 97 | <- | Minus |
| arm_3R | 1027790..1028308 | 417..932 | 99 | <- | Minus |
| arm_3R | 1028382..1028575 | 223..416 | 100 | <- | Minus |
| arm_3R | 1028772..1028880 | 114..222 | 100 | <- | Minus |
| arm_3R | 1028946..1029054 | 1..113 | 96 | | Minus |
