UFO07472.5prime Sequence
1053 bp (942 high quality bases) assembled on 2011-07-01
> UFO07472.5prime
CAGTCGACATGTTTCAGCGACACACGTCGGTGATCGATCTTCATCGTTGG
AATTATCCTGAATGCTGGCCGTTTGATAGAAACGGAAAAGTCGAAAACAT
ATATGTAATGGAACATTCCGATCCCGTGCCTTATCAACAGCTATCGACAT
TATCGCCGACCACCGCACTATACTCGAACTTTAACAACTCTTTGGAAGCA
GGAACCGCAGAAAGACTACGCCTTAATAAAACTGGGTCACAGGTCCACAG
CCTATATGTCGGCGACGGTCAAGTGCAAAATGCTTCTGAACCCTTATCTT
TTCCCAGCCACCTTAATCTGTACCAATATGTTCGTACCCCGGCAAACTTC
ACTATTAACAGCCGCAACCGATATATTCCGTACTATAACAATCGTTCCTA
CTCTGCTTCAACAACTGGTTTCCCTATAGCCAGTACTCCGCTGATCAGCA
GCCATGCGCACATCCAAGACCAACAAGGTGCAGCGTCTTATCAAACGATT
GTTCCGCTTTATCAGACCGCAAGCCACTGTGCGCAGCAACATACAACATT
GGCATCGGTAGCTCCAATCGTGGACAATTCATTCGTTGAAAGCACCACTT
GCCCCATGGCCGGCATCACCTCTCACAACATCAAAATGAAAATGATTCCT
CCCAATGTATTGTTGCCTTGCTCCAGGCCTACGACAACCGCGGTGACCAT
CCAAAGGTCAACCGGAGAAGACGGTGGAGATAAAGAAGGTCATACTTTTG
CTAAGATTACGGAGATGAGCGATGCTGTTACTTTGCAGATCACCAACTTG
GACTACTCGCTGGACGATCACATATACGCAGCTTTCTACTTAATCAGCTT
AAGCCCATTACGCTAGTGTGTCACTTGTCTCGAGGGAAGCTCTATGCAAG
TCACTGTCAGATCTTATTCGCAAGCAAGTCGTCTCATTGCACGCAGAAGA
TCGACACAACGCATGCTGTCAGTTATACTCGAGATCTCCCTACGAGTCAA
CACTCCGCTGCAGTCGCAGACTTCGACGATGTACATCAACCCTGCCAATG
TTA
UFO07472.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:02:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17018-RF | 4749 | CG17018-RF | 499..1543 | 9..1024 | 4505 | 96.9 | Plus |
| CG17018-RD | 4468 | CG17018-RD | 218..1262 | 9..1024 | 4505 | 96.9 | Plus |
| CG17018-RE | 4815 | CG17018-RE | 598..1589 | 62..1024 | 4240 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22363430..22364263 | 62..892 | 4005 | 99.5 | Plus |
| 2L | 23513712 | 2L | 22354917..22354969 | 9..61 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:02:35 has no hits.
UFO07472.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:35 Download gff for
UFO07472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17018-RD | 214..1258 | 9..1024 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:58 Download gff for
UFO07472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17018-RD | 218..1262 | 9..1024 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:15 Download gff for
UFO07472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17018-RD | 218..1262 | 9..1024 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:15 Download gff for
UFO07472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22354917..22354965 | 9..57 | 100 | <- | Plus |
| 2L | 22363423..22364288 | 58..912 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:58 Download gff for
UFO07472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22354917..22354965 | 9..57 | 100 | <- | Plus |
| arm_2L | 22363423..22364288 | 58..912 | 98 | <- | Plus |
