UFO07473.5prime Sequence
1102 bp (1000 high quality bases) assembled on 2011-07-01
> UFO07473.5prime
CAGTCGACATGAACTCCGAGCATGGATTTAATCCAGCCTTCAATATGGCC
ACCATACGGCAAGCATTCACAGAGGCGGTGGAGAGAGTCAGAATGCCTAC
GCCCACACGCCTGCGCGACCTCATCCGACAGATTCGCGCCGCCAGAACCG
CCGCCGAGGAGCGGGCGGTGGTCAACAAAGAGTGCGCCTACATACGGAGC
ACGTTCCGCGAGGAGGACTCCGTCTGGCGCTGTCGCAACATTGCCAAGCT
GCTGTACATACACATGCTCGGCTATCCGGCTCACTTTGGCCAACTGGAGT
GCCTTAAGCTGACGGCCAGCACGCGGTTCACAGACAAGCGGATCGGCTAC
CTGGGCGCCATGCTGCTGCTGGATGAGCGGCAGGATGTCCACCTGCTTAT
CACCAACTGCTTGAAGAACGACTTGAACAGCTCGACGCAGTTCGTCGTGG
GCCTAGCCCTATGCACTCTGGGTGCGATCGCCTCACCGGAGATGGCCCGA
GATCTGGCCAGCGAGGTGGAGCGTCTGATGAAGTCCCCGAACACGTACAT
TCGCAAGAAGGCGACGCTGTGCGCCTTTCGCGTCATTCGCCGTGTGCCCG
AGCTAATGGAGATCTTCTTGCCGGCCACGCGTTCCCTGCTCAGCGAGAAG
AATCATGGAATTTTGATCACTGGCGTTACGCTGATCACGGAGATGTGCGA
GAACAGTTCGGACACGCTGATGCATTTCAAGAAGGATAGCGGAAATCGAG
AGATTGTGCCGAACTTGGTGCGCATCCTGAAGAATCTGATCCTGGGCGGC
TATTCGCCGGAGCACGATGTCAGCGGCGTGAGCGATCCGTTCCTGCAGGT
GAAGATACTGCGACTGCTGCGCATACTGGGCCACAACGATCCCGACGCCT
CGGAGCGATGAACGATATACTGGTCCAGGTGGCCACCAACACGGAGACGA
GCAGATGTGGGCAATACCATCCTCTACGAGACCGTGCCTCTCCATCATGG
ACATACGCTCGGGAGGGTGACTGCCCGTCCTGCCGTCAATATCTGGGACG
ATTCCTGGCTTCAACTCGGACAAGAAACAATCGTTGTGGCACTGAAACGC
TG
UFO07473.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:03:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1gamma-RH | 4997 | CG9113-RH | 606..1703 | 9..1102 | 5090 | 98.3 | Plus |
| AP-1gamma-RC | 4761 | CG9113-RC | 375..1472 | 9..1102 | 5090 | 98.3 | Plus |
| AP-1gamma-RD | 4666 | CG9113-RD | 296..1377 | 25..1102 | 5010 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:03:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9111854..9112093 | 419..658 | 1200 | 100 | Plus |
| X | 23542271 | X | 9113641..9113899 | 751..1007 | 1090 | 97.3 | Plus |
| X | 23542271 | X | 9111597..9111786 | 229..418 | 950 | 100 | Plus |
| X | 23542271 | X | 9111385..9111528 | 86..229 | 720 | 100 | Plus |
| X | 23542271 | X | 9112162..9112240 | 657..735 | 395 | 100 | Plus |
| X | 23542271 | X | 9111081..9111143 | 25..87 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:03:14 has no hits.
UFO07473.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:40 Download gff for
UFO07473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1gamma-RC | 313..1420 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:17 Download gff for
UFO07473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1gamma-RC | 365..1472 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:27 Download gff for
UFO07473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1gamma-RC | 365..1472 | 1..1102 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:27 Download gff for
UFO07473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9111082..9111143 | 26..87 | 100 | -> | Plus |
| X | 9111387..9111528 | 88..229 | 100 | -> | Plus |
| X | 9111598..9111786 | 230..418 | 100 | -> | Plus |
| X | 9111854..9112092 | 419..657 | 100 | -> | Plus |
| X | 9112163..9112239 | 658..734 | 100 | -> | Plus |
| X | 9112750..9112767 | 735..752 | 100 | -> | Plus |
| X | 9113643..9113899 | 753..1007 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:17 Download gff for
UFO07473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9005115..9005176 | 26..87 | 100 | -> | Plus |
| arm_X | 9005420..9005561 | 88..229 | 100 | -> | Plus |
| arm_X | 9005631..9005819 | 230..418 | 100 | -> | Plus |
| arm_X | 9005887..9006125 | 419..657 | 100 | -> | Plus |
| arm_X | 9006196..9006272 | 658..734 | 100 | -> | Plus |
| arm_X | 9006783..9006800 | 735..752 | 100 | -> | Plus |
| arm_X | 9007676..9007932 | 753..1007 | 97 | -> | Plus |
