UFO07478.5prime Sequence
1117 bp (1015 high quality bases) assembled on 2011-07-01
> UFO07478.5prime
CAGTCGACATGAAGTCGAGGGAAAAGAATGGGTCTGCGGCTAGTAACTCG
GACGTGGCACTGGTCAATGTTTTATCGCAGCAAAAGCTGAGAAGGCACAG
ATTGCCCTGGTACTACGCACCATCCTTTCTCCTCCTATGGGTGGCTCTAT
TCTACGCAGTGGTATATCCTTTGTACCATCGCCTGCCCGATAGCGTCCTT
ATATCGCATGAATCGAGTAAACCTGGACAATTTGTGGCGGAGAGGGCGCA
AAGGCTGCTCTACAAATACGACAAGATCGGACCCAAGGTGGTGGGCAGTG
TGGCGAATGAGGTGACAACGGTGGCCTTTCTCGAAGAGGAGGTGGAGAAC
ATCCGGGCGGCAATGCGCAGTGATCTCTACGAGCTGCAGCTGGATGTCCA
ACATCCCTCGGGCGCCTACATGCATTGGCAGATGGTGAACATGTACCAGG
GCGTCACGAATGTGGTTGTTAAGATTAGTAGCCGGAGCTCCAATAGTTCA
TCCTACCTGCTGGTGAACAGTCATTTCGATTCCAAGCCCAGCAGTCCTGG
TTCCGGCGACGATGGCACCATGGTTGTGGTCATGCTGGAAGTCCTTCGCC
AGGTGGCCATATCGGACACCCCATTCGAACATCCCATTGTGTTTCTGTTC
AACGGAGCTGAGGAAAATCCTTTGGAGGCATCGCACGGCTTTATTACCCA
ACATAAATGGGCGGGAAACTGCAAGGCTCTCATAAATCTGGAAGTGGCAG
CAGCGGAGGTCGTGACCTGTTGTTCCAGAGTGGACCGAATAATCCGTGGC
TGATCAAGTACTATTACCAGAATGCTAAACATCCGTTTGCCACCACAATG
GCCGAGGAAATATTTCAGTCTGGCATTTTGCCATCCGATACGGATTTCCG
TATCTTTCGCGACTACGGACAACTGCCAGGCTTGACATGGCGCAAATCAG
CAATGGCTATGTATACATACCATTTTGATATGTTCAGCGTGCCCATGATC
CCTACAAAGTTCTGGAAAACATGCTATCTCTGGTGCGGCTTTCGCTGATG
CGCTGAAATGCAGATCAAGATCCAGCGAGACCGTGTTTCTTGACATCTGG
CCATTCTTGGTACTAAC
UFO07478.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:03:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30047-RA | 2809 | CG30047-RA | 43..1117 | 3..1064 | 5015 | 98.5 | Plus |
| CG30043-RA | 3082 | CG30043-RA | 485..943 | 432..889 | 800 | 78.7 | Plus |
| CG30049-RA | 2796 | CG30049-RA | 141..1006 | 108..970 | 565 | 71.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:03:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12351920..12352441 | 30..551 | 2610 | 100 | Plus |
| 2R | 25286936 | 2R | 12352496..12352672 | 549..725 | 885 | 100 | Plus |
| 2R | 25286936 | 2R | 12353040..12353163 | 807..930 | 620 | 100 | Plus |
| 2R | 25286936 | 2R | 12360157..12360330 | 552..725 | 465 | 84.5 | Plus |
| 2R | 25286936 | 2R | 12352728..12352818 | 719..808 | 390 | 97.8 | Plus |
| 2R | 25286936 | 2R | 19377593..19377688 | 630..725 | 270 | 85.4 | Plus |
| 2R | 25286936 | 2R | 12356731..12356843 | 807..919 | 220 | 79.6 | Plus |
| 2R | 25286936 | 2R | 12367917..12368039 | 423..545 | 210 | 78 | Plus |
| 2R | 25286936 | 2R | 12353224..12353368 | 931..1064 | 190 | 88.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:03:24 has no hits.
UFO07478.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:42 Download gff for
UFO07478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30047-RA | 41..1124 | 1..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:22 Download gff for
UFO07478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30047-RA | 41..1124 | 1..1070 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:32 Download gff for
UFO07478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30047-RA | 41..1124 | 1..1070 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:32 Download gff for
UFO07478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12351833..12351861 | 1..29 | 93 | -> | Plus |
| 2R | 12351920..12352439 | 30..549 | 100 | -> | Plus |
| 2R | 12352497..12352671 | 550..724 | 100 | -> | Plus |
| 2R | 12352734..12352818 | 725..808 | 98 | -> | Plus |
| 2R | 12353042..12353162 | 809..929 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:22 Download gff for
UFO07478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8239338..8239366 | 1..29 | 93 | -> | Plus |
| arm_2R | 8239425..8239944 | 30..549 | 100 | -> | Plus |
| arm_2R | 8240002..8240176 | 550..724 | 100 | -> | Plus |
| arm_2R | 8240239..8240323 | 725..808 | 98 | -> | Plus |
| arm_2R | 8240547..8240667 | 809..929 | 100 | -> | Plus |
