UFO07479.5prime Sequence
1107 bp (1001 high quality bases) assembled on 2011-07-01
> UFO07479.5prime
CAGTCGACATGTCGATTACCCTAGAGGAGGAAATCTTCGGCTTGGCCGTG
AATCCGTTCACCAAGTCGCCCGAAATGGTGCGCCGGTACACGCTTAAGAA
CTCCAAGGGCATGACCGTGTCAGTGATCCAACTGGGGGCCATCATCCAGA
GCGTCTGCTTGCCGGACGCCTACAAGAAGGTGGATGATGTGTGCCTCGGC
TTCGACGACATCGCCAGTTACTTGGCCAACAAGGGAGCCTACATCGGTGG
GACCCTCGGACGAGTGGCCAACCGGGTGGCCAATGGCGAGTATACGTTTA
ACGACACGAAAGTCTCGGTGACAAAAAATATCCAGGACAAATTCCAGCTG
CACGGTGGCTTCATTGGATTCGATAGCGTCATATGGGAGGTGGTACAGAA
GTCGGCCGAGGGAGTGATATTTCGGCACGTATCGCCACACGGACACGAGG
GCTATCCGGGCAAACTGACGTGCCTCATCACCTACCAGCTGGACAACGAG
AATCGGTTGTGGGTCAGGTACGAGGCCACCACAGATCGCTCCACCATGGT
CAACCTCTCGAGCCATGCCTACTTCAACTTGGCGGGGCACGGATCCGGAG
CGAAGGGTCTTTCAGAGCACACGGTGGAGATTGCGTCCGATCAGATCGTG
GACACGGACGAGCTGCAGATTCCCACGGGGAAGCTAGTCGACGTCAAGGA
CACCGTCTTTGATCTCAGGCTGCCGGTTCTGATGCGCGACCGACTCATGC
AGTTCGAAAATCGTCAGATCAAGGGCTACGACAACTGCTTCGTGGTCAAC
GGAGGGCGTGTGCAAAAAAGTGTAGCCCAGGTGGCCAAGATCGTGCATCC
GCCATCCTGCCGGGTACTGGAGGTTTGGACCGACCAGCCCGGTATGCAGT
TCTACACCGCGAACATCTTACCTCGATAGTGGGCAAAATTGCACTAAATA
TGAGAGCACGGCTCCTTTTGGGTGGAGACGGAGAAGTTCCCCGATGCAAT
GACACCCGGAGTTCCCTCCGATCAGCCTCGAGCGAACGAGAAGTTATCCG
CCACGATGTTCCTCTACTGTTAAGGTCCAGGAAGTCCTCATGCTGTTGCA
CACGATC
UFO07479.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:03:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32444-RA | 1280 | CG32444-RA | 36..1123 | 5..1088 | 5090 | 98.4 | Plus |
| CG4988-RA | 1218 | CG4988-RA | 155..981 | 87..913 | 925 | 74.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21638144..21638861 | 333..1044 | 3280 | 98.7 | Plus |
| 3L | 28110227 | 3L | 21636982..21637313 | 5..336 | 1645 | 99.7 | Plus |
| 2L | 23513712 | 2L | 11695305..11695870 | 348..913 | 595 | 73.7 | Plus |
| 2L | 23513712 | 2L | 11694958..11695153 | 87..282 | 440 | 81.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:03:29 has no hits.
UFO07479.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:42 Download gff for
UFO07479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32444-RA | 33..1123 | 1..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:23 Download gff for
UFO07479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32444-RA | 33..1123 | 1..1088 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:33 Download gff for
UFO07479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32444-RA | 33..1123 | 1..1088 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:33 Download gff for
UFO07479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21636979..21637312 | 1..335 | 99 | -> | Plus |
| 3L | 21638147..21638903 | 336..1088 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:23 Download gff for
UFO07479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21630079..21630412 | 1..335 | 99 | -> | Plus |
| arm_3L | 21631247..21632003 | 336..1088 | 97 | | Plus |
