UFO07480.5prime Sequence
1134 bp (1043 high quality bases) assembled on 2011-07-01
> UFO07480.5prime
CAGTCGACATGCCACCCTTTGAAGAGGGTGAATCCAAGCCAGAGGAGCAG
ATACCTCTAAAGCCGCCCCGACGCCACAAGAAGATGAAGTCAGCGGACCA
AGAGGCCGCCCAAACGCCGGCGGAGGATCACGAGGAGGAGCAATTGCTGC
CGGGCAGCGGGACGAGCAATCTGCGTTATGCCCGGGCCAATTTGAGCCAG
AGCAGCCTGATGCTGAGCCACCAGCAGGGCTCCTTCGAATCGTCAACCGA
ACGAACGGCGAGCAGTGAGACCCTGGATGTAATGCCGATATCGAGGCGCT
ACCAGGTGCATCCACAGCCGAACCGCTTGGGGATTCGGCAGCCAGCCTCG
GCCTTGGCGAGCGCTCTGCATGCCACTGCCAGATTGGCGGCCAGTGTGGA
TGCCTATACGGCGGCGGCTACAGCCACAGCGGCAACCGGTGACTACGGCG
ATTATATGCGCCCGCAACCGAACCTCGGTCACGCCCACCAACTGCCCCTC
ACCCAGACAACCCAGACAGCCCAGCCCCTGCACCACCAGCTGCCCGCTCA
CCAGCTGGGCAATCTGAGAGCGAGCAATTTTGTGGGGTCGTCGCGGTATC
TCTATCACAGCCAGTTTAATTCGAATTCGCCGCAAACGAGACGCTTCACT
GCGCAGCGAGACGGGTCGCCAGCATATGCGGCTTCAGTGGCGGCAGCTTC
AGCGGCGGCCGCAGCTTCAGCAGTAGCACCGATAGCGCCACTAGCACCAC
TAGCCTCCATAGCATCGCCCCCATTTGCGGCCCAGCCGCCGCCCTTTCAG
TTGCGCACCTACCAACAGAATCAATCCTACCGCTTTCAGCCGCGCGGACA
CATCGCACCGCCAGCAGCAGCATGTCGCAATCCGGCGAGGATCTCCACTC
GCCCACCTACCTGTCCTGCGGAGCTCCAGCTTAGTCGGGCCAAGCTAAAG
CATCCAGCAGACGTCCGCCCTGCTCTCCGGATCGCCATGGTGGCGGATGG
TGGGAGGTGCACCTGGATCACGAAACGAATGTACACCGGGCATGCTGATA
GCTTCGCATCTGCACCACCCCCTCTGGGGGCGGGCCAATGCTGGCCCTGA
TGATCCACACCTTACTGCAAATCGAAACGGGGTG
UFO07480.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| olf186-F-RG | 4582 | CG11430-RG | 2270..3381 | 8..1112 | 5115 | 98 | Plus |
| olf186-F-RE | 3581 | CG11430-RE | 1567..2678 | 8..1112 | 5115 | 98 | Plus |
| olf186-F-RF | 2407 | CG11430-RF | 925..1206 | 838..1112 | 965 | 92.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17856810..17857800 | 8..992 | 4645 | 99.1 | Plus |
| 2R | 25286936 | 2R | 17859269..17859381 | 1003..1112 | 205 | 85 | Plus |
Blast to na_te.dros performed 2014-11-27 00:03:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1063..1163 | 678..778 | 136 | 59.4 | Plus |
UFO07480.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:43 Download gff for
UFO07480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-F-RE | 1301..2417 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:25 Download gff for
UFO07480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-F-RE | 1562..2678 | 1..1112 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:35 Download gff for
UFO07480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-F-RE | 1562..2678 | 1..1112 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:35 Download gff for
UFO07480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17856805..17857797 | 1..989 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:25 Download gff for
UFO07480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13744310..13745302 | 1..989 | 98 | -> | Plus |
