UFO07486.5prime Sequence
1138 bp (1012 high quality bases) assembled on 2011-07-01
> UFO07486.5prime
CAGTCGACATGGATTCACAAAGGTCCACGTTGGTCCACTGGTTCCGTAAA
GGACTCCGGTTGCACGACAATCCGGCATTATCGCACATTTTTACCGCCGC
TAACGCTGCTCCAGGAAAATACTTTGTTCGCCCGATTTTCATTTTGGATC
CAGGAATCCTCGATTGGATGCAAGTGGGTGCCAATCGATGGCGATTCCTG
CAGCAAACGCTGGAGGACTTGGATAACCAGCTTCGGAAACTTAATTCCCG
TCTGTTTGTGGTGCGCGGGAAGCCCGCAGAGGTTTTTCCCCGTATTTTTA
AGAGTTGGCGCGTGGAAATGCTAACTTTTGAGACAGATATCGAGCCGTAC
TCCGTGACCCGGGATGCTGCCGTGCAGAAGTTGGCCAAGGCAGAGGGTGT
GAGAGTGGAAACTCATTGCTCCCACACGATTTATAATCCGGAATTAGTAA
TAGCGAAGAATCTTGGCAAGGCTCCAATTACCTATCAAAAGTTCCTGGGC
ATTGTGGAGCAACTAAAGGTACCTAAAGTTCTAGGGGTTCCTGAAAAGCT
TAAAAACATGCCTACACCACCCAAAGATGAGGTGGAGCAAAAGGATTCGG
CGGCCTATGATTGTCCTACGATGAAGCAATTAGTAAAACGCCCGGAGGAA
CTGGGCCCTAATAAGTTTCCGGGAGGCGAAACAGAGGCACTGCGCCGCAT
GGAGGAATCCCTAAAGGATGAAATTTGGGTTGCCCGCTTTGAGAAGCCCA
ACACGGCACCCAACTCGCTGGAGCCTAGCACTACCGTACTAAGCCCTTAC
CTCAAATTTGGATGCCTTAGTGCCCGACTGTTCAATCAAAAGCTCAAGGA
AATTATCAAACGCCAGCCGAAGCACTCGCAGCCGCCCGTTTCGCTCATTG
GACACTCATGTGAGGGATTTACTACACAGTGCGCTGCGACCCATTTCGAT
CGATGTGGGCATGTATACTGCATGCAATCGTGCAGACATCAGATCACTGA
GCTGACACACGACGCCCAGATATCTCATCGAGCATCATGCTCAGCTGCCC
AGAGGTGATCCACATCTGCGCTGCATGCATGTTCTACCCGAACCCTGAAC
TGGAGAGACCGGTCAGACCTGCTGTGACCGACTGCCTA
UFO07486.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phr6-4-RD | 1989 | CG2488-RD | 73..1053 | 9..977 | 4625 | 98.8 | Plus |
| phr6-4-RC | 2044 | CG2488-RC | 128..1108 | 9..977 | 4625 | 98.8 | Plus |
| phr6-4-RB | 2161 | CG2488-RB | 245..1225 | 9..977 | 4625 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:03:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20644663..20645330 | 676..9 | 3340 | 100 | Minus |
| 2L | 23513712 | 2L | 20644372..20644602 | 904..674 | 1155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:03:55 has no hits.
UFO07486.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:46 Download gff for
UFO07486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phr6-4-RB | 243..1235 | 9..985 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:37 Download gff for
UFO07486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phr6-4-RB | 245..1237 | 9..985 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:46 Download gff for
UFO07486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phr6-4-RB | 245..1237 | 9..985 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:46 Download gff for
UFO07486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20644275..20644600 | 676..985 | 95 | <- | Minus |
| 2L | 20644664..20645330 | 9..675 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:37 Download gff for
UFO07486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20644275..20644600 | 676..985 | 95 | <- | Minus |
| arm_2L | 20644664..20645330 | 9..675 | 100 | | Minus |
