UFO07489.5prime Sequence
1154 bp (1034 high quality bases) assembled on 2011-07-01
> UFO07489.5prime
CAGTCGACATGGGTTTGACGCGCGTGCTGGTGAAGGATGGCGGTTTCGGC
ACCCAGATGACCGTCCATGTGGGTGACTCTGTGGATGGGGATCCGCTATG
GAGTGCCCGCTTCAATGCCACCAATCCGGCGGCCATTATCAGCACCCACC
TGGACTTTTTGCAGAATGGTGCCGATATCATTTTGACCAACACCTACCAG
TCCAGTGTCGATGGTTACATGGAGTACCTGGAGCTGGACGAGGAGCAGAG
CATCGAGCTGATAAAGAACACGGTCCGCCTGGCCCACATCGCCAAGGAAC
GCTATCTCACCGAGTGCTATCAGGCGCAGCTGTCGGTGCAGGAGGGATAC
CCTTTGATCATTGCCTCCATTGGACCCTTTGGGGCCCACCTGCACGATGG
CTCCGAGTACACCGGTAGCTATGCCGACTTTGTGCCGGCCAAGGAGATTA
CGGACTGGCATCGCGTGAGGATCGAAGCGTGCTTGGAGGCTGGTGTGGAT
GCGCTGGCCATCGAGACGATTCCCTGTCAAATGGAGGCGGAGGCCCTGGT
GGAGATGCTGTGCGATGATTATCCGGATGTGAAGTTCTGGGTGGCCTTCC
AGTGCAAGGATGAGAATACCCTGGCGCATGGAGAAACCTTTGCGGACGCG
GCGAATGCTATTTGGGACCTCTTGGCTGAACGAAATGCCCAGGATAAGTG
CCTGGCCATCGGAGTAAATTGTGTGCATCCGAAGTTTGTGACCCCGCTCT
TTAAGAGTTTGAATGGTGACCGCGAAGTGGGTGAGCAGATACCGTTGGTG
GTGTACCCCAATAGCGGAGAGGTATACGACGTGGTCAACGGCTGGCAGGA
AGGAGCACTGTGTGCCCTTGGCGAACTACGTTCCGGAGTGGGCGCAACTG
GGGGCCAAGGTCATTGGGGGATGCTGTCGCACTTATGCGAGGGAAATACG
CCACATCGGGGAGGCCATTCGCGACTGGAACAAACTGAAGAAGCTCTCAG
CAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCCTTAATCTAATCACACTAGCCTAGAGAATCGTGTC
CATGACTATGGCTGATCTCACCATAAAAGCCTGCGCACGAACGTCGACAT
CGAT
UFO07489.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10621-RC | 1419 | CG10621-RC | 290..1283 | 8..999 | 4905 | 99.7 | Plus |
| CG10621-RB | 1519 | CG10621-RB | 390..1383 | 8..999 | 4905 | 99.7 | Plus |
| CG10621-RA | 1302 | CG10621-RA | 173..1166 | 8..999 | 4905 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:04:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18952342..18952998 | 999..345 | 3190 | 99.4 | Minus |
| 2L | 23513712 | 2L | 18953157..18953337 | 346..166 | 905 | 100 | Minus |
| 2L | 23513712 | 2L | 18953404..18953561 | 165..8 | 790 | 100 | Minus |
| 2L | 23513712 | 2L | 18956799..18956949 | 231..81 | 185 | 74.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:04:05 has no hits.
UFO07489.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:47 Download gff for
UFO07489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10621-RA | 159..1163 | 1..1003 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:40 Download gff for
UFO07489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10621-RA | 165..1169 | 1..1003 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:49 Download gff for
UFO07489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10621-RA | 165..1169 | 1..1003 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:49 Download gff for
UFO07489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18952342..18952997 | 346..999 | 99 | <- | Minus |
| 2L | 18953158..18953337 | 166..345 | 100 | <- | Minus |
| 2L | 18953404..18953565 | 1..165 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:40 Download gff for
UFO07489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18952342..18952997 | 346..999 | 99 | <- | Minus |
| arm_2L | 18953158..18953337 | 166..345 | 100 | <- | Minus |
| arm_2L | 18953404..18953565 | 1..165 | 97 | | Minus |
