UFO07492.5prime Sequence
1104 bp (987 high quality bases) assembled on 2011-07-01
> UFO07492.5prime
CAGTCGACATGATATTCGCTCGGTGGACGCGCAAACAAATGCTCACAATG
TTTGGCTTGGGAGCTGGGCTGCTGGGCCTTGTGATTGTGATCGGTGTGCT
CAACAGCGGCGTGTCCTCGAAGGACCTCGACTGGAAGGAGGCGTCCAGAT
CGAAGTGCTTCAAGACGCGTCCCAACACCACGCACTCCACCTTGGAACTG
GTGCACATTGTGTTCAGACATGGCATTCGCACCCCAGTGGACACTTATCC
CAAGGATCCCTACTTAAACGACGGCTTCAAGCCAACGGGCTGGGGACATG
TGACTAACTCAGGAAAACGGGAACTCTTCGAAATGGGTCGCTGGCTGAAT
CGAAGATACGGCGAGTTTATGGGTCCTTATTACAGACCGGATCGCCTGCA
TGCCCAAGCCACTGCCTCTCCGAGGGCCATGATGTCTTTGCAAACAACAC
TGGCCAGCATGTTTGAGCCGCGGGGAACCCCCATGGAGTGGAATAAGCAC
CTCAACTGGCAGCCCATCCCAATCGTGTCGGAACCCCTGGATGAGGACTC
GCTCCTGCTGGTGCGCACTCCCTGTCCCCGCTACTTTGAAGCCTTGGAAG
AGGTCTTTAAGAGACCGGAAGTTATCGCTGAAACCGAGCCCTACGAACAA
ATGTTCCGCGAGCTGACAAATCTGACTGGAAAGGCGATCCAGAGTGCCGA
GGATATCAATTCCCTATACATAACCCTCCTCGCCGAACAGGAATTCGGCT
ACAAGTTGCCCGACTGGGCCAAGGACTACTTCCCCGATCGCATGCAGTTT
CTGGCCGAGCAGAGTTACGTCTACAATGCGTACACCCCCGAGATGCAGAG
ATCAAGGGCGGACCGTTTCTGAGAGGATGTACAAGGAGATGGTCGCCAAG
AGGGCGGGTAGCCTGAAGCCCAAGGATCGCGGTATGTTCATATACACCGG
GCCACGACTGGACGTCGCCATATCCTGATGGGCTTGGGTGTGTTGGAAGC
GCCGATGCCACGGTCGCGGGGGATGGCCATTTCGAGACGCATAGGATAAG
GAACGGGAGAGTACTTATGGTGGAATCTCCTCGCACGACAGACGGCTGTC
TCGA
UFO07492.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:04:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9452-RA | 1652 | CG9452-RA | 249..1354 | 9..1104 | 4995 | 97.8 | Plus |
| CG9449-RH | 2589 | CG9449-RH | 1759..1835 | 795..870 | 225 | 87 | Plus |
| CG9449-RG | 1939 | CG9449-RG | 1326..1402 | 795..870 | 225 | 87 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:04:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19501776..19502274 | 1045..551 | 2000 | 97 | Minus |
| 3L | 28110227 | 3L | 19503323..19503622 | 308..9 | 1500 | 100 | Minus |
| 3L | 28110227 | 3L | 19502326..19502484 | 551..393 | 795 | 100 | Minus |
| 3L | 28110227 | 3L | 19502542..19502625 | 392..309 | 420 | 100 | Minus |
| 3L | 28110227 | 3L | 19492807..19492883 | 870..795 | 200 | 87 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:04:14 has no hits.
UFO07492.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:48 Download gff for
UFO07492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9452-RA | 242..1353 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:44 Download gff for
UFO07492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9452-RA | 242..1353 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:53 Download gff for
UFO07492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9452-RA | 242..1353 | 1..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:53 Download gff for
UFO07492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19503323..19503629 | 1..308 | 98 | | Minus |
| 3L | 19501746..19502273 | 552..1074 | 96 | <- | Minus |
| 3L | 19502326..19502484 | 393..551 | 100 | <- | Minus |
| 3L | 19502542..19502625 | 309..392 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:44 Download gff for
UFO07492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19494846..19495373 | 552..1074 | 96 | <- | Minus |
| arm_3L | 19495426..19495584 | 393..551 | 100 | <- | Minus |
| arm_3L | 19495642..19495725 | 309..392 | 100 | <- | Minus |
| arm_3L | 19496423..19496729 | 1..308 | 98 | | Minus |
