UFO07496.5prime Sequence
845 bp (738 high quality bases) assembled on 2011-07-01
> UFO07496.5prime
CAGTCGACATGGGTGAAGTAGCTGCCACAGTGGAGCCTCTGGCCGCGGTC
AAGTCGAAATCCATGCGATCCCGGAAGAGACGACAGCGTCGTAGGCGACA
AATAGCCTACCTGGCCATATGTGGATTAAGTGTAGCCATATTCGGCTTCG
CTTTGGCCACGCTGATCCGGCCCACAACCGCCCAGGCTGATGCAGATCCC
GGGAGCTGGCGCAAGGGATATGTGGGCCATGGCACCACGCACGAACAGCT
TGGCCAGCCCCATTGGCCACCAGTCCAGTACACTGTATACCGGCCGACAA
CCAACTACACAAAGGCACCACCACCTCCCACGTCCGCCATGAACCCCATT
TTCAATTTTACACACTTTCTATATGACAAGGTTCTTTATAGGGATGAACC
CATTCCGGAGGGTTACATTGTCGTAAAGAATTCGGACACTTTGAGCTTGG
GTCCCAAAGTGGAGGAGAATGACTGGCGGGATCTATTGGCTCATTATTGG
ATGGTTCTCATCTGGGTTGTTATTCTCGTGGTGCTCATTATAGTCATACC
GTTCATTGCCGTTTGCTATTGCTGTTTCTGTTGCTGCCGACGATGTCGAC
AGGGATGTCCTCCGTGTACCAGTAAACAGGATGCTCAGCGGCGCTTCTGT
TGTGGCATCTGTCTGTTGATCCTCATCATCGGACTGATTTTTGGCATCAT
TATCGCCTTTGTACCACAAATGATGACAGCGGCTTTGCCGAGACTTCGAG
AACATGAGCGCGGCAGCGAGACACCTTGCCCTTATCTGGAGATGTAGCCG
ATCACGGTCACCCATCTGATGATGTACACCTACGAGGGAATTGGA
UFO07496.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| prominin-like-RG | 4046 | CG7740-RG | 479..1314 | 8..837 | 3850 | 98.1 | Plus |
| prominin-like-RF | 3442 | CG7740-RF | 360..1195 | 8..837 | 3850 | 98.1 | Plus |
| prominin-like-RE | 3491 | CG7740-RE | 277..1112 | 8..837 | 3850 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3120666..3121071 | 413..8 | 2030 | 100 | Minus |
| 3L | 28110227 | 3L | 3120459..3120607 | 559..411 | 745 | 100 | Minus |
| 3L | 28110227 | 3L | 3120272..3120400 | 688..560 | 645 | 100 | Minus |
| 3L | 28110227 | 3L | 3120060..3120214 | 837..689 | 250 | 87.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:03:46 has no hits.
UFO07496.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:45 Download gff for
UFO07496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prominin-like-RA | 471..1320 | 1..844 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:33 Download gff for
UFO07496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prominin-like-RE | 269..1118 | 1..844 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:41 Download gff for
UFO07496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| prominin-like-RE | 269..1118 | 1..844 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:41 Download gff for
UFO07496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3120272..3120400 | 560..688 | 100 | <- | Minus |
| 3L | 3120459..3120606 | 412..559 | 100 | <- | Minus |
| 3L | 3120668..3121079 | 1..411 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:33 Download gff for
UFO07496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3120272..3120400 | 560..688 | 100 | <- | Minus |
| arm_3L | 3120459..3120606 | 412..559 | 100 | <- | Minus |
| arm_3L | 3120668..3121079 | 1..411 | 99 | | Minus |
