UFO07518.5prime Sequence
1162 bp (1047 high quality bases) assembled on 2011-07-06
> UFO07518.5prime
CAGTCGACATGCAGAAGCTCTACCACGAGGAGCGCCGTCGCAAGTATCTA
CAGGAGCTGCAGGACATGAATTCGCGCCGCCACACGGACAACTTCACCCC
GTCGCAGAAGTCGCCCATCGCCCTCAATCGCTACGATGACTTCCCCACGG
ACGTGACCCTCAAGTCGCTGGTGGGCCCCAAGACGGTGGCCCGGGCTCTC
TTTAACTTCCAGGGACAGACCTCGAAGGAGCTATCCTTCCGCAAGGGCGA
CACAATCTACATCAGGCGGCAGATTGATGCCAACTGGTATGAGGGCGAGC
ACAATGCCATGATTGGACTGCTTCCAGCCAGCTATGTTGAGATTGTCAGT
CGAGATGGAGCCCGTACCCCATCCAAACGGCCATCGGAGGGTCAGGCCCG
TGCCAAATACAACTTCCAGGCCCAGTCGGGCATTGAACTCTCCTTGAACA
AGGGCGAATTGGTCACTTTGACACGCCGAGTGGATGGCAACTGGTTCGAG
GGCAAGATTGCCAACAGGAAGGGCATCTTCCCGTGCTCCTACGTGGAGGT
ACTTACTGATATTGGTGCTGAGGACATTGCGGCCAGGACAACCACCGTGA
TCACCAGCCAGAGCACCACGAATCTGCGGCCCAATCTCGACGTGCTGCGC
ACAAACATCAACAATGAGTTCAATACGCTGACGCAAAATGGAGCACAGCC
ACCGAACGGAATCCTCAAGGAAACGCGGACACTTCACAAGACGGACGCCC
TCCATGTGGACACCAGTTCCGAACCATTGGCGTACCGCGCACTGTACAAG
TACCGGCCCCAGAACTCCGACGAACTGGAACTGCTCGAGGGAGATGTGGT
CCATGTGCTGGAGAAGTGCGACGACGGATGGTTCGTGGGCACCTCGCAGA
GGACCGGCTGCTTCGGCACATTCCCCGGCACTACGTGGAACGGGCCGCAA
GCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGGTGGTCATAAT
CATATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCTGGTCAT
TGACTAGTGCTTGGATTCTCACCATAAAACGCCCGGCGGCACGGAGCGTT
CTGAACAATCGATGGGAGTTCTGAGGTCATTACTGGATTTCACGGATCCA
GCGGACTCGATC
UFO07518.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CAP-RY | 8546 | CG18408-RY | 6892..7832 | 7..946 | 4680 | 99.9 | Plus |
| CAP-RX | 8834 | CG18408-RX | 7180..8120 | 7..946 | 4680 | 99.9 | Plus |
| CAP-RW | 5528 | CG18408-RW | 3874..4814 | 7..946 | 4680 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:06:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10305736..10305972 | 547..783 | 1185 | 100 | Plus |
| 2R | 25286936 | 2R | 10304711..10304931 | 7..227 | 1105 | 100 | Plus |
| 2R | 25286936 | 2R | 10305470..10305680 | 340..550 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 10306145..10306310 | 782..946 | 780 | 99.4 | Plus |
| 2R | 25286936 | 2R | 10304988..10305102 | 227..341 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:06:17 has no hits.
UFO07518.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:04 Download gff for
UFO07518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-RC | 1663..2607 | 1..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:37 Download gff for
UFO07518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-RW | 3870..4814 | 1..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:36 Download gff for
UFO07518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-RW | 3870..4814 | 1..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:36 Download gff for
UFO07518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10305738..10305970 | 549..781 | 100 | -> | Plus |
| 2R | 10306145..10306310 | 782..946 | 99 | == | Plus |
| 2R | 10304707..10304930 | 1..226 | 98 | -> | Plus |
| 2R | 10304988..10305102 | 227..341 | 100 | -> | Plus |
| 2R | 10305472..10305678 | 342..548 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:37 Download gff for
UFO07518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6193650..6193815 | 782..946 | 99 | == | Plus |
| arm_2R | 6192212..6192435 | 1..226 | 98 | -> | Plus |
| arm_2R | 6192493..6192607 | 227..341 | 100 | -> | Plus |
| arm_2R | 6192977..6193183 | 342..548 | 100 | -> | Plus |
| arm_2R | 6193243..6193475 | 549..781 | 100 | -> | Plus |
