UFO07521.5prime Sequence
1154 bp (1054 high quality bases) assembled on 2011-07-06
> UFO07521.5prime
CAGTCGACATGTCCAGCGAGTCCTCCACCGAAGGCGACAGCGATCTATAC
GATCCTTTGGCCGAGGAGCTGCACAACGTCCAGTTGGTCAAACATGTGAC
CCGCGAGAATATTGATGCCCTGAATGCCAAGTTTGCCAACCTGCAGGAGC
CACCAGCCATGTACTTAATAGAATACCAGGAGTTGACCTCCAAGCTCCAC
GAACTGGAGGCCAAGGAGCAGGAACTAATGGAGCGACTGAACTCGCAGGA
CCAGCAGGAGGACTCCTCCTTGGTCGAGCGGTTCAAGGAGCAGCCCCACT
ATCAAAATCAAACTCAAATCCTGCAGCAACAACGGCAATTGGCGCGAGTG
CACCACGGCAACGATCTAACCGATAGCTTGGGCTCTCAGCCGGGCAGCCA
ATGTGGAACTTTGACCCGTCAGCCCAAGATCCTTTTGCGAGCCCACCTGC
CCAATCAACAGCGCACTTCAGTGGAGGTAATTTCGGGAGTACGACTATGT
GATGCCCTCATGAAGGCCCTGAAACTCCGGCAACTAACGCCGGATATGTG
CGAAGTAAGCACAACTCATTCCGGAAGACATATCATACCCTGGCACACGG
ATATCGGCACTCTGCATGTGGAGGAGATCTTTGTCAGGCTGCTGGATAAG
TTTCCCATTAGGACACACATCAAGCACCAGATCATACGGAAGACCTTCTT
CTCGTTGGTATTCTGCGAGGGCTGTCGAAGGCTTCTGTTCACCGGGTTCT
ACTGTAGCCAGTGTAATTTTCGATTCCATCAGAGGTGTGCCAATAGAGTG
CCGATGCTGTGCCAGCCCTTTCCCATGGATAGCTACTATCAGCTACTGCT
GGCCGAGAATCCGGATAATGGCGTTGGTTTCCCCGGCAGAGGCACTGCTG
TCCGCTTCAATATGAGCAGCCGGAGTCGCAGTCGTCGTTGCAGCAGCAGT
GGCAGCAGCAGCAGCTCGAAGCCACCATCTTCATCCTCCGGCATCATCGA
CAGGGTCGTCCGCCGAGGATCAGCCAGACGATCGATCCAATTCCGCGGCC
AAATGGTTGCATCACAACATTCGATCCGTCCAGCGGAAGTGGCACGCAGT
TGGAATATGCAAGCGAACCTCTTGCCGATCGTCAGAATCACTCAATTCCA
GCAG
UFO07521.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phl-RE | 4247 | CG2845-RE | 1588..2662 | 8..1080 | 5235 | 99.3 | Plus |
| phl-RA | 3247 | CG2845-RA | 588..1662 | 8..1080 | 5235 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:04:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2341176..2342088 | 170..1080 | 4325 | 99.2 | Plus |
| X | 23542271 | X | 2340885..2341048 | 8..171 | 820 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:04:18 has no hits.
UFO07521.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:49 Download gff for
UFO07521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-RA | 754..1848 | 1..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:46 Download gff for
UFO07521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-RA | 754..1848 | 1..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:54 Download gff for
UFO07521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phl-RA | 582..1676 | 1..1094 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:54 Download gff for
UFO07521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2340879..2341048 | 1..171 | 97 | -> | Plus |
| X | 2341178..2342055 | 172..1047 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:46 Download gff for
UFO07521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2234912..2235081 | 1..171 | 97 | -> | Plus |
| arm_X | 2235211..2236088 | 172..1047 | 99 | == | Plus |
