UFO07527.5prime Sequence
1005 bp (977 high quality bases) assembled on 2011-07-06
> UFO07527.5prime
CAGTCGACATGCTGCTAAAAAAGTATGTGAAAACGCGGCGTAAGCTGAAG
ATTCTACTCCTGCTGGCCATCGTCGCCCTGCTGGTCATCACCATCATAGT
GCTGGGCTCCAGCGGACGCAATGCGGCCATCGAACTGCTGCTGGACGAGC
GATTCATCGCACGCGCCTACAGGCCCGGGGATCAGCCCCAAGTGGCGGAG
AAGCCGCCGCCGGTGGCCGTCGCGCTGCTCCAGCCGCAGCGGGAGAACGG
AGTGATTGTGCCCGAGAAGTATGACGAGCAGAAGATCAAGGAGCGCATCA
TTCAGAGCAAAATCGATCTGATGAAGCAGCAGCAGCAGCGGGACCACGAG
GCGGAGCAGTCTTCGCGTACCACTTTGGATGTGGTGATCAGTGCAGTGCA
CATATTCTACACTGCCCCGGTGCCGTGGTACAAGTCGAAGAAGCCGCCTC
CGCCGCCAGCGGAGCACCCAAACGATGTGCCACTGACCACGCCGCGACCA
GTGCGAATCCTAAACACCGCCTTCTATCCGGCACTGGGTCTGTACAAGCC
CAGTGGCTCGCTGCTGGCCCAGCATTTCGAGAACATACGCAGCTGTGGCA
TCGGTGTGCTCATCCTGAGCTTCTCCGGTGGCAAGCCCGCGGAGGCGGCA
CTGCTGCATCAGATCTTGGAACTGGCACCGCAGCACAATCTTAGCGTTAC
CTTTGAGCTCAGTGTGGCCGGGAATCAGAGCGTGGAGTTTGTGCGCCAGC
AGCTGCAGGAGATTGCCACATACACCAGCCTAGCTGGATTCTACAAGTGT
GGAGTCAGTCGAGAGGTGTCTCCCTGCCGGTTCTCTACGTGAGCAATGCC
TACAGTTGAGTGATAGTCTGGGAAGGCTGTTGTGTCGATCGCCTTCGCTG
GTGGAACCGGATGGTCTGCGGAGAATTCTGGATGCCTTATTCATTGGACA
ATAAGCTCAAAGGCATGCCGATGTCCTGCGAGGTTGTGCTTCGATGGCTT
CTACA
UFO07527.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14015-RA | 2148 | CG14015-RA | 87..1089 | 9..1005 | 4850 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:04:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5538094..5538683 | 950..363 | 2850 | 99.7 | Minus |
| 2L | 23513712 | 2L | 5538757..5539110 | 362..9 | 1770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:04:23 has no hits.
UFO07527.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:49 Download gff for
UFO07527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14015-RA | 60..1061 | 9..1004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:49 Download gff for
UFO07527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14015-RA | 87..1088 | 9..1004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:56 Download gff for
UFO07527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14015-RA | 87..1088 | 9..1004 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:56 Download gff for
UFO07527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5537978..5538029 | 955..1004 | 94 | <- | Minus |
| 2L | 5538088..5538683 | 363..954 | 99 | <- | Minus |
| 2L | 5538757..5539110 | 9..362 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:49 Download gff for
UFO07527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5538757..5539110 | 9..362 | 100 | | Minus |
| arm_2L | 5537978..5538029 | 955..1004 | 94 | <- | Minus |
| arm_2L | 5538088..5538683 | 363..954 | 99 | <- | Minus |
