UFO07528.5prime Sequence
1147 bp (1029 high quality bases) assembled on 2011-07-06
> UFO07528.5prime
CAGTCGACATGGATCCCTTCGTGTTCTTCATAGTACTGGCATCGCTTTAT
GGCGTTCTTTACTTTTTCGACCGCTTCTTCAAGAGTTGCATGCACTACCC
GTACGATGCCTTCCTCAAGAACACCGGGCTGAGTATAAATTTCATGAGCC
TCCACTGGCACACGAGTGCCTTTAACAGGACCCTCCTACGCTGGGGATCT
GCCGGTAACAGCTGCACCCGGAGAGTAATGATCACCAGCTTTAATGTAGG
AGTCCTGGTCACCTTTTCTCTGCTCCCGATCGGTCTGATCCTGCTCATTG
CCACTATCTTCAGCAGTGGTGAACAAGACAGCTCTTCGTCTGTATCCTCG
CCCGTTGGAGTCCCTGTGCAGCTGGAAATTCTACTGCCCGGCGTCAACTT
GCCGTTGGAGGAGATCGGATACTACATCACAACCCTTGTGCTCTGCTTGG
TGGTGCACGAGATGGGACACGCCCTGGCCGCTGTGATGGAGGATGTGCCT
GTCACCGGGTTTGGAATAAAGTTCATCTTCTGCCTGCCGTTAGCATACAC
GGAGCTCTCCCACGACCACTTAAACAGTCTACGTTGGTTCCGCAAGCTAC
GTGTTCTGTGCGCTGGAATCTGGCATAATTTTGTGTTCGCTGGCGTGTGC
TATCTCTTAATCTCAACGGTGGGAATCACTATGTCACCTTTGTACGCTTA
CAACCAACACGTAGTGGTCACTGAACTAACAAGGAAATCCCCGCTGAGGG
GAGAGCGCGGCTTGCAAGTGGACAATCAAATAACCCAAGTAAACGGCTGC
CCAGTAAACAGCGAGGAGAGTTGGGTGACATGCCTGCAGAACTCTCTGAG
CTCAAGCCGGGCTACTGTGTGAGTGCGGACTTCGTGCAGCTTAACGACGA
AAGCAGCGCCATCTCACATCATAGCATTGATGGTCAGCTACAGTGCTGTG
ATGACTAAATCCGACGTAGCTGCTTCGAGGTGGTGGAGACGCAAATGAGA
TGTGCCGGTGGAGCTGCCGCAGCATGTATGTCTCAATGTGGCCGCACTTG
GAGGAGGTCTTCGAGCACTGCTCCGTCGGAGTTGCACGAGGGATTCTGCC
TACGACGCTTATACGAATATACTGCCTATGACGTCAAGCGCACGACT
UFO07528.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:04:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S2P-RA | 2020 | CG8988-RA | 287..1435 | 8..1140 | 5285 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:04:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11842716..11843324 | 1117..520 | 2440 | 97.2 | Minus |
| 2R | 25286936 | 2R | 11843390..11843829 | 521..82 | 2200 | 100 | Minus |
| 2R | 25286936 | 2R | 11843879..11843954 | 83..8 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:04:28 has no hits.
UFO07528.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:50 Download gff for
UFO07528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 281..1435 | 1..1143 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:51 Download gff for
UFO07528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 283..1437 | 1..1143 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:54:59 Download gff for
UFO07528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S2P-RA | 283..1437 | 1..1143 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:54:59 Download gff for
UFO07528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11842686..11843322 | 522..1143 | 96 | <- | Minus |
| 2R | 11843390..11843827 | 84..521 | 100 | <- | Minus |
| 2R | 11843879..11843958 | 1..83 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:51 Download gff for
UFO07528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7730191..7730827 | 522..1143 | 96 | <- | Minus |
| arm_2R | 7730895..7731332 | 84..521 | 100 | <- | Minus |
| arm_2R | 7731384..7731463 | 1..83 | 96 | | Minus |
