Clone UFO07533 Report

Search the DGRC for UFO07533

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:75
Well:33
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptfon-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO07533.5prime Sequence

1142 bp (1038 high quality bases) assembled on 2011-07-06

> UFO07533.5prime
CAGTCGACATGAATAAGCTGCTGATTTTGGCCCTTTGCCTGGGTGTGGTC
TGTGGAGATTTCCAACAAAGTTTGGGGAGAACCAAACGTGACAGTTTCCA
CTCTCGCCACTACAGTACCCACGGACAAGCGGTGGAGCAGGCTCGCAAGA
ACGCCGGCTACGGTGGAGGTTATAGCGGTAGCTTTGGAGCTGGCGTCGAT
GGCGCCTCCGCTCAGGTTGATGACTCTGCTCTGGGAAAACTCGAGAGCTC
CTACGACTCCGTGGGTGCGACTGAATCCGCCGAAGGTGCCTCCGCTGGCG
GATTAGGTGGTGCCGTTGAGACTTTGGGTGGTTCTGCTGGTACGAACACC
ATTGGTGCTGGTGTTGGAAGTTCCTTCGGCTCTAACTTTGCCTCCGGTTT
TGGCGGCCAGAATGCTGCCTCCTTTGGCGCTCAGAATGCTGCTGGCTTTG
GCGCCCAGAATGCCGCCTCCTTTGGCGCCCAGAATGCTGCCTCCTTCGGT
AGCTCCTTCTCCAGCAACGCCGCCTTTCAGACCAGCTCCGCCTCCAACTT
CGGCAGCACCGCCGCTCACCAGGTGGGCAGCAATGTGGAGTTTGCTGATA
ACGCCAATGCCGGCAACAAGGTTGACTTTGGTGGCGTAAACGCCGTGGAC
TCCAGTGCTCAGCTGCTCAGCGGAGTTCAAACCGTGCAGTCCGTCCCCAC
TTCCGAGTATTACAGGCACGAGAAGATTGTGTCCACCCCGCAACAGGTGG
TCTACACCATTCCCGGTGGCTCCCAGCGTTACGTTCATCACGAGGAACGT
ATCGTTGAACAGCCTACCCAGGTGACCCAGACGGTCCCAGTTCAAACCGC
ACACTACTATCAACGAAAGGTGACCACCACTGCGTCCGCACCACAGCTGG
TTCAGCCAGTTGCCAGCAGCCGTTTGACTTACGGATCGAATGCCGCCTCC
ACCTTTGGCAGCAATGCTGCCTCCACTTCGGCAGCAATGCCGCCACCAAC
TTCGGCAGCAATGCCGCCACCAACTTCGGCAGCAATGCGCATTAATCCTC
AGTTGCAGTTCTTTTGTCGGAACTTCAGAGAATCAGCAGCGGATCGAGCT
GCTCAGCACCAGCAGCCTGCCGGTTCCAGCTGCTTAAGCGAT

UFO07533.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
fon-RC 1925 CG15825-RC 71..1177 9..1107 5165 98.3 Plus
fon-RB 2276 CG15825-RB 71..1177 9..1107 5165 98.3 Plus
fon-RD 1916 CG15825-RD 71..1168 9..1107 5020 97.5 Plus
fon-RC 1925 CG15825-RC 1001..1053 986..1038 190 90.6 Plus
fon-RB 2276 CG15825-RB 1001..1053 986..1038 190 90.6 Plus
fon-RC 1925 CG15825-RC 1049..1105 939..994 185 89.5 Plus
fon-RB 2276 CG15825-RB 1049..1105 939..994 185 89.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19384431..19385364 1038..106 4620 99.9 Minus
2L 23513712 2L 19384427..19384507 1018..939 280 92.6 Minus
2L 23513712 2L 19384455..19384531 1038..963 275 93.5 Minus
2L 23513712 2L 19386087..19386135 57..9 245 100 Minus
2L 23513712 2L 19384974..19385047 472..399 205 85.1 Minus
2L 23513712 2L 19384998..19385071 496..423 205 85.1 Minus
2L 23513712 2L 19385670..19385709 106..67 200 100 Minus
2L 23513712 2L 19384479..19384531 1038..986 190 90.6 Minus
Blast to na_te.dros performed 2014-11-27 00:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2461..2648 845..1035 125 56.5 Plus

UFO07533.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:51 Download gff for UFO07533.5prime
Subject Subject Range Query Range Percent Splice Strand
fon-RC 68..1116 9..1054 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:54 Download gff for UFO07533.5prime
Subject Subject Range Query Range Percent Splice Strand
fon-RB 71..1119 9..1054 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:00 Download gff for UFO07533.5prime
Subject Subject Range Query Range Percent Splice Strand
fon-RB 71..1119 9..1054 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:00 Download gff for UFO07533.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19384413..19385363 107..1054 99 <- Minus
2L 19385670..19385707 67..106 95 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:54 Download gff for UFO07533.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19384413..19385363 107..1054 99 <- Minus
arm_2L 19385670..19385707 67..106 95 -> Minus