UFO07533.5prime Sequence
1142 bp (1038 high quality bases) assembled on 2011-07-06
> UFO07533.5prime
CAGTCGACATGAATAAGCTGCTGATTTTGGCCCTTTGCCTGGGTGTGGTC
TGTGGAGATTTCCAACAAAGTTTGGGGAGAACCAAACGTGACAGTTTCCA
CTCTCGCCACTACAGTACCCACGGACAAGCGGTGGAGCAGGCTCGCAAGA
ACGCCGGCTACGGTGGAGGTTATAGCGGTAGCTTTGGAGCTGGCGTCGAT
GGCGCCTCCGCTCAGGTTGATGACTCTGCTCTGGGAAAACTCGAGAGCTC
CTACGACTCCGTGGGTGCGACTGAATCCGCCGAAGGTGCCTCCGCTGGCG
GATTAGGTGGTGCCGTTGAGACTTTGGGTGGTTCTGCTGGTACGAACACC
ATTGGTGCTGGTGTTGGAAGTTCCTTCGGCTCTAACTTTGCCTCCGGTTT
TGGCGGCCAGAATGCTGCCTCCTTTGGCGCTCAGAATGCTGCTGGCTTTG
GCGCCCAGAATGCCGCCTCCTTTGGCGCCCAGAATGCTGCCTCCTTCGGT
AGCTCCTTCTCCAGCAACGCCGCCTTTCAGACCAGCTCCGCCTCCAACTT
CGGCAGCACCGCCGCTCACCAGGTGGGCAGCAATGTGGAGTTTGCTGATA
ACGCCAATGCCGGCAACAAGGTTGACTTTGGTGGCGTAAACGCCGTGGAC
TCCAGTGCTCAGCTGCTCAGCGGAGTTCAAACCGTGCAGTCCGTCCCCAC
TTCCGAGTATTACAGGCACGAGAAGATTGTGTCCACCCCGCAACAGGTGG
TCTACACCATTCCCGGTGGCTCCCAGCGTTACGTTCATCACGAGGAACGT
ATCGTTGAACAGCCTACCCAGGTGACCCAGACGGTCCCAGTTCAAACCGC
ACACTACTATCAACGAAAGGTGACCACCACTGCGTCCGCACCACAGCTGG
TTCAGCCAGTTGCCAGCAGCCGTTTGACTTACGGATCGAATGCCGCCTCC
ACCTTTGGCAGCAATGCTGCCTCCACTTCGGCAGCAATGCCGCCACCAAC
TTCGGCAGCAATGCCGCCACCAACTTCGGCAGCAATGCGCATTAATCCTC
AGTTGCAGTTCTTTTGTCGGAACTTCAGAGAATCAGCAGCGGATCGAGCT
GCTCAGCACCAGCAGCCTGCCGGTTCCAGCTGCTTAAGCGAT
UFO07533.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:04:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fon-RC | 1925 | CG15825-RC | 71..1177 | 9..1107 | 5165 | 98.3 | Plus |
fon-RB | 2276 | CG15825-RB | 71..1177 | 9..1107 | 5165 | 98.3 | Plus |
fon-RD | 1916 | CG15825-RD | 71..1168 | 9..1107 | 5020 | 97.5 | Plus |
fon-RC | 1925 | CG15825-RC | 1001..1053 | 986..1038 | 190 | 90.6 | Plus |
fon-RB | 2276 | CG15825-RB | 1001..1053 | 986..1038 | 190 | 90.6 | Plus |
fon-RC | 1925 | CG15825-RC | 1049..1105 | 939..994 | 185 | 89.5 | Plus |
fon-RB | 2276 | CG15825-RB | 1049..1105 | 939..994 | 185 | 89.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:04:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19384431..19385364 | 1038..106 | 4620 | 99.9 | Minus |
2L | 23513712 | 2L | 19384427..19384507 | 1018..939 | 280 | 92.6 | Minus |
2L | 23513712 | 2L | 19384455..19384531 | 1038..963 | 275 | 93.5 | Minus |
2L | 23513712 | 2L | 19386087..19386135 | 57..9 | 245 | 100 | Minus |
2L | 23513712 | 2L | 19384974..19385047 | 472..399 | 205 | 85.1 | Minus |
2L | 23513712 | 2L | 19384998..19385071 | 496..423 | 205 | 85.1 | Minus |
2L | 23513712 | 2L | 19385670..19385709 | 106..67 | 200 | 100 | Minus |
2L | 23513712 | 2L | 19384479..19384531 | 1038..986 | 190 | 90.6 | Minus |
Blast to na_te.dros performed 2014-11-27 00:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2461..2648 | 845..1035 | 125 | 56.5 | Plus |
UFO07533.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:51 Download gff for
UFO07533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fon-RC | 68..1116 | 9..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:54 Download gff for
UFO07533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fon-RB | 71..1119 | 9..1054 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:00 Download gff for
UFO07533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fon-RB | 71..1119 | 9..1054 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:00 Download gff for
UFO07533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19384413..19385363 | 107..1054 | 99 | <- | Minus |
2L | 19385670..19385707 | 67..106 | 95 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:54 Download gff for
UFO07533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19384413..19385363 | 107..1054 | 99 | <- | Minus |
arm_2L | 19385670..19385707 | 67..106 | 95 | -> | Minus |