UFO07538.5prime Sequence
1141 bp (1022 high quality bases) assembled on 2011-07-06
> UFO07538.5prime
CAGTCGACATGCACTGGTACGACGAATACAAGCACATCGGTTACGACTGG
GATGCCAAGAAGATTATTAAACCACCACAAGGAGATCAAATTGATGAGTT
CCTGCGTAAGATCGAGGACCCAGACTTTTGGCGTACCGTCAAGGATCCAC
TTACCGGTCAGGATGTGCGCCTAACAGACGAGGACATTGCTCTGATCAAG
CGCATCGTTTCGGGTCGCATACCCAACAAGGATCACGAAGAGTATGAGCC
CTGGATCGAATGGTTCACATCGGAGGTGGAAAAGATGCCCATCAAGAACG
TACCCGACCACAAACGCTCTTTCCTGCCCTCAGTTTCCGAGAAAAAGCGC
GTCTCTCGCATGGTGCACGCCCTCAAAATGGGCTGGATGAAGACCACTGA
GGAAGTGGAACGCGAGAAGCAGGCCAAGCGCGGTCCCAAGTTCTACATGC
TGTGGGAAACGGACACCAGTCGGGAACACATGCGCCGCATCCACGATCCA
GTCTCTGCGCCCAAACGCGACCTTCCCGGTCATGCCGAGTCCTACAATCC
ACCGCCAGAGTATCTTTTCGATGCCAAGGAGACCAAGGAGTGGCTTAAAC
TAAAGGACGAGCCACACAAGCGCAAGCTGCACTTCATGCCACAGAAGTTC
AAGTCGCTGAGGGAGGTGCCCGCATACTCGAGATACCTTCGGGAGCGTTT
CCTTCGTTGCCTGGATCTTTACCTGTGTCCCCGTGCAAAGCGTGTCAAGC
TGAACATCGATGCCGAGTACCTTATCCCCAAGTTGCCCTCGCCGCGTGAC
CTGCAACCCTTTCCCACGGTGGAGAGTATGGTTTACCGTGGCCACACCGA
TCTGGTGCGGTCTGTTAGTGTGGAGCCCAAAGGAGAGTACCTCGTCTCCG
GTTCGGATGATAAACCGTCAAGATTTGGGAAATTGCAACAGGTCGTTGCA
TTCGCACATCGAGACCGACGAAGTGGTACGCTGTGTGCTTGGTGTCAAAT
CCCAAGCTGTCTTTTTATTGCGGGTGCACTGCAATCGCTTGCTGCTCGTC
AATCCTAAAGTGGGCGATAAGTGCTGGGTGAAAAAAGAACCGACGATCTC
CTGGCTGAGGCCCCAGTCAGATTCATTGACTACCATCAGAC
UFO07538.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:04:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5033-RA | 2514 | CG5033-RA | 569..1696 | 8..1129 | 5220 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:04:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17790317..17791223 | 8..914 | 4520 | 99.9 | Plus |
| 2R | 25286936 | 2R | 17791297..17791486 | 924..1111 | 440 | 88 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:04:37 has no hits.
UFO07538.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:51 Download gff for
UFO07538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-RB | 614..1747 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:56 Download gff for
UFO07538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-RA | 563..1696 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:01 Download gff for
UFO07538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5033-RA | 563..1696 | 1..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:01 Download gff for
UFO07538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17790311..17791233 | 1..923 | 99 | -> | Plus |
| 2R | 17791297..17791499 | 924..1122 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:56 Download gff for
UFO07538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13677816..13678738 | 1..923 | 99 | -> | Plus |
| arm_2R | 13678802..13679004 | 924..1122 | 91 | -> | Plus |
