UFO07543.5prime Sequence
1149 bp (1017 high quality bases) assembled on 2011-07-06
> UFO07543.5prime
CAGTCGACATGGCCGTTAAGCAGAATAACAGCGAGGCGGGTGATAATGCC
TCGGATAATGCCGGAGGAGCTGGCAACGGCATTCCGCCCAACGCCAAACC
CATGTCCGCGAACGGAATGGCGAATGCCGAAGAGAACGTATTGCCAAAGG
GCATGGACACGGGTTCGCCCGCTGGCGAGAGCCTGAACTCCAACCGATCG
GGCAAGCGGGATATTAAGGCCCTGCTGGCATACCTCCAAAGCATCGATAT
GCCGGAGCAAGGCCACAATGTGATGGCCATCTGCGAGAGGGTTATCGTGG
ACTTGGCCCGTCTGCAAATTCCACGAGGCGCATCCTGTCCACGCCTAAAG
GAAGACGTCTGCCAGGTCGGTGCCTTTCTGGCTACGCGCAACGAGAAGTT
CCACCAAATGTTCTACCTGCGTGTCGTCTACGAGCTGATCACCAAGTCGC
CATTCGAGCCACCACCCTCGTGTGCCGTGGCCATTGTGTTCCAGCTGTTC
GACTCCACGCAGATCCTGGAGGCTGTACACTCGCTGCTGGAACAGAATGT
GCAGGACTCGAGCATTAAGAAGACGGTGAACCTGCTCTGTGATTGGATCA
CGTACTGCACCTTTTGCAGCACTCTCAATCTTTGGGTGCTGGCGCTGCTC
AAGGGGCTAAGGGATCAGGGCAAAATGGCGCTGCTCGACGAGATTGCAAT
GGACAACATCGAGAAGCTGTTCCACGTGATGATCTTTCCGGCGCTGAGGC
AAAAGGCCGCACCGGTTGTGTTTCACATGCTGTCAACGATTAATCAGACC
CCCGAGGTTTTTCACAAGATCTTGCCAAGGATCCCACGAGTCCTGCAGTA
TGTGAAGAATCAGTCGACCACCATGGACGAGATTGGCCTGAAACCAAGAA
TGTCTGCAGCAACTGGTCGACCTAACCAGCGCCCTAATGCTACGTTTCTA
TGATCAGGATGAGCTTTTTTGTCGCAACCAAGAAAGCCCTGCAGACCTAT
GAGCCCTTCTCCGAATTGCTGGCTCTGGCAAAGGCATGCATGAAAATTGC
CCAGTCGTTGGGTCGGCGAATGGAGGTTGAACTCGTACTGGGATACCTGC
TACAATGAATCGTACCTCAGGCCCTAGCCATGACCAGCGAATTTAGCCA
UFO07543.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:04:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DUBAI-RA | 3530 | CG8830-RA | 552..1704 | 5..1147 | 5215 | 97.6 | Plus |
| DUBAI-RB | 4024 | CG8830-RB | 566..1718 | 5..1147 | 5215 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:04:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12434472..12435285 | 818..5 | 4055 | 99.9 | Minus |
| 2R | 25286936 | 2R | 12434156..12434408 | 1068..817 | 855 | 95.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:04:41 has no hits.
UFO07543.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:52 Download gff for
UFO07543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8830-RA | 543..1697 | 1..1148 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:58 Download gff for
UFO07543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8830-RB | 564..1718 | 1..1148 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:03 Download gff for
UFO07543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DUBAI-RB | 564..1718 | 1..1148 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:03 Download gff for
UFO07543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12434070..12434406 | 819..1146 | 91 | <- | Minus |
| 2R | 12434472..12435287 | 1..818 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:58 Download gff for
UFO07543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8321575..8321911 | 819..1146 | 91 | <- | Minus |
| arm_2R | 8321977..8322792 | 1..818 | 99 | | Minus |
