UFO07545.5prime Sequence
1122 bp (1027 high quality bases) assembled on 2011-07-06
> UFO07545.5prime
CAGTCGACATGCTAGAACCGCCGAAATTTATAGAGAATGATTGCTACAAC
GGCAGCCGGACCTTCACTTGGCTGGCGGATATGGTGGGCCTCTCCGTGGA
CTTGGTAAACTTTTTGATTTGCCAAATATCTGCTCTCTTCCTGGCCTCGC
TATTTCGGTCGATGCTGCATCCTTCGAAGGTTTCCAGCAAATTGCGCCAC
ACATTCGCCCTATCGATTGGCCTGGCCTTCGGCTACTTTTGCTTTGGTCA
GCAGGCAATCCACATTGCCGGATTGCCGGCAATATGTTACATCGTTATCC
GCACCCAAGATCCACGTATTGTCCAAAGAGCCGTCCTGCTGGTAGCCATG
AGTTATCTGCTGTGCGTACATTTGATGCGCCAGCTTTACGACTACGGATC
CTACGCCCTGGACATAACCGGGCCCCTTATGATCATCACTCAGAAGGTAA
CCAGCCTGGCGTTCAGCATTCACGATGGGTTTGTGCGGGGCGATGAGGAA
CTCACCAAAGCGCAACAGTACCACGCCATCCGCAAAATGCCCTCTGCTTT
GGAGTACTTCTCCTACGTGTGGCACTTCCAAAGCATCCTAGCCGGTCCTC
TCGTTTTCTACAAGGATTATATCGAGTTTGTCGAAGGCTACAATTTGCTT
AGTACTCCACCGGGCAATGGAAATCTCGACAGCAGCAAGAGAGAAGTAGT
ACTGGAACCTTCGCCTACTAAAGCGGTAATACGTAAAGTAGTTGGTAGTC
TTGTGTGCGCTTTCATCTTCATGAAGTTCGTGAAAATATATCCCGTGAAA
GACATGAAGGAGGATGACTTTATGAACAATACCAGCATGGTTTACAAGTA
CTGGTACGCCATGATGGCTACCACCTGCATACGCTTTAAGTATTATCACG
CCTGGCTCCTAGCGGATGCCATATGCAACAACTCAGGTCTAGGTTTCACC
GGCTACGATATGATGGCAATTCCAAGTGGGACCTGATATCTAACATCAAT
GTGCTGTCGTTCGAGTTTCAACGAACATGGCGCGATGCATCAACAACTGG
AACTGGCGGCACCAACGCTGGCTGCAACGCTGTCTATGAACGATGACCAG
CAGTACGAAGCTCCTACCTTCG
UFO07545.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:04:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oys-RE | 4791 | CG18445-RE | 274..1396 | 9..1122 | 5265 | 98.6 | Plus |
| oys-RB | 3850 | CG18445-RB | 274..1396 | 9..1122 | 5265 | 98.6 | Plus |
| oys-RA | 3613 | CG18445-RA | 274..1396 | 9..1122 | 5265 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10038581..10038928 | 1015..669 | 1675 | 99.4 | Minus |
| 2R | 25286936 | 2R | 10039626..10039850 | 328..104 | 1125 | 100 | Minus |
| 2R | 25286936 | 2R | 10039172..10039345 | 669..496 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 10039403..10039574 | 498..327 | 860 | 100 | Minus |
| 2R | 25286936 | 2R | 10048249..10048346 | 106..9 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:04:46 has no hits.
UFO07545.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:53 Download gff for
UFO07545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oys-RA | 266..1379 | 1..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:00 Download gff for
UFO07545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oys-RA | 267..1380 | 1..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:04 Download gff for
UFO07545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oys-RA | 267..1380 | 1..1111 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:04 Download gff for
UFO07545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10038581..10038928 | 669..1015 | 99 | <- | Minus |
| 2R | 10039173..10039343 | 498..668 | 100 | <- | Minus |
| 2R | 10039404..10039572 | 329..497 | 100 | <- | Minus |
| 2R | 10039626..10039849 | 105..328 | 100 | <- | Minus |
| 2R | 10048251..10048353 | 1..104 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:00 Download gff for
UFO07545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5926086..5926433 | 669..1015 | 99 | <- | Minus |
| arm_2R | 5926678..5926848 | 498..668 | 100 | <- | Minus |
| arm_2R | 5926909..5927077 | 329..497 | 100 | <- | Minus |
| arm_2R | 5927131..5927354 | 105..328 | 100 | <- | Minus |
| arm_2R | 5935756..5935858 | 1..104 | 97 | | Minus |
