UFO07548.5prime Sequence
516 bp (380 high quality bases) assembled on 2011-07-06
> UFO07548.5prime
CAGTCGACATGGCCACCACCCAGCAGTACTCGCTGCGGTGGAACAACTAC
CTGCGCCACCTCACCTACTCCCTGGACAACCACCGGCTGAACGATGACTT
CGTGGACGTCAGCCTGTGCGTGGATGGACGCAGGATCAAGGCCCACAAGG
TGGTACTCTCCTCCTGCTCGTCCTACTTTAAGGAGATATTCAAGGAGAAC
CCACATCCGCATCCAGTCATTATATTTAAGTTTATCAAGTTCGAGGATCT
CAATTCGATTATCGAGTTCATGTACCAGGGCGAAGTCAATGTGCAGCAGG
AGGCGCTGCAATCGTTCCTGCAAACTGCCGAGCTGCTGGCCGTCCAAGGA
CTCCCCCGCCGAGGAGAAGGAGAAAGCCGCAGATCCCGGTGGCGCCGCTG
ATCAGCGAGCACAAGCTGATCAGACTATACCGAGCACCATACGCGCGGGT
CACGAGCAGCAGCAGCAGGTGGTCCAATGTGGCCAGGGCGCAGACAGCTA
CGCAAACCATCGAATA
UFO07548.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:04:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12236-RB | 3038 | CG12236-RB | 358..861 | 9..514 | 2330 | 98 | Plus |
| CG12236-RA | 2335 | CG12236-RA | 358..861 | 9..514 | 2330 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:04:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5908492..5908762 | 9..279 | 1355 | 100 | Plus |
| X | 23542271 | X | 5908869..5909104 | 277..514 | 890 | 95.4 | Plus |
Blast to na_te.dros performed 2014-11-27 00:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 2031..2082 | 416..366 | 122 | 73.1 | Minus |
| G5 | 4856 | G5 G5_DM 4856bp | 3289..3318 | 282..311 | 105 | 83.3 | Plus |
UFO07548.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:18:54 Download gff for
UFO07548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12236-RB | 361..871 | 1..515 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:04 Download gff for
UFO07548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12236-RA | 361..871 | 1..515 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:06 Download gff for
UFO07548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12236-RA | 351..861 | 1..515 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:06 Download gff for
UFO07548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5908485..5908761 | 1..278 | 98 | -> | Plus |
| X | 5908871..5909104 | 279..515 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:04 Download gff for
UFO07548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5802518..5802794 | 1..278 | 98 | -> | Plus |
| arm_X | 5802904..5803137 | 279..515 | 95 | | Plus |
